Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1602 ATGAAGACACTCTCATCTCTGGTGGATGTGTTTTTGGTACTTGCATTGATTTGTTGCAGCTCATGGACAGTTTGGAGCAGCTCAAGCTGCAAACGGATAAACATTAAGGAAGTTCGACCACACAGTGTGAGTATTACCGAATTTGGAGCAGTAGGAGATGGGATCACTCTCAATACAAAGGCGTTTCAGAATGCCATCTTCTACCTAAATTCATATGCTGACAAAGGTGGAGCCAAGCTTTTTGTCCCTGCTGGCCAGTGGTTAACTGGTAGTTTTAATCTCATCAGCCATCTCACTTTGTGGTTGGACAAAGATGCAATAATTCTTGGATCAACGAACTCTGAAGATTGGCCGATTGTGGATCCTCTACCATCATATGGTAGGGGAAGGGAGTTGCCGGGTGGACGGCATAGAAGCCTCATTTATGGGCGCAATTTAACTGATGTCATCATAACAGGTAACAATGGAACTATAGATGGTCAAGGGAGTATCTGGTGGAGCAAATTTCGTAACAAAACACTCAACCATACACGCCCCCATTTAGTCGAATTGATGAATTCAACAGAGGTTCTCATTTCAAATGTAACCTTCTTGAATTCACCATTTTGGACTATTCATCCTGTATATTGCAGCCATGTTACAGTTCAGAATGTCACAATCCTTGCTCCTTTTGGTTCACCAAATACAGATGGGATTGATCCAGATTCTTCTGATAATGTATGCATTGAAGACTGTTATATAAGCACCAGCGATGATCTTATTTCCATCAAAAGTGGATGGGATGAATATGGAATTTCATTTGGTCGACCAAGTACAAACATTAACATCCACAGGCTCACCGGGAGAACAACGAGTGCCGGAATCGCTATCGGAAGTGAGATGTCTGGAGGAGTTTCAGAAGTTCATGCAGAAGATATTTACATTTTTGATTCACGTAGTGCAATTAGAATAAAGACTTCTCCCGGCAGAGGTGGTTATGTTAAAAATGTCCATATCTCTAACATGACATTGGTTAATGTAGATATTGCTATTAGGTTCACTGGTTTATATGGAGAGCATCCAGATGACTCATATGACCCGGATGCTCTACCTGTGATAGAAAGGATTACTGTCAAAAATGTGATAGGGGAAAACATTAATCGTGCGGGACTTATACAAGGTATTAAAGGTGACAACTTTGTCGATATCTGTCTATTAAATATCACTCTTAATGTGAGCAAAAAAAATCCATGGAACTGCTCCAACGTTAAAGGATACTCTGAATTGGTTTTTCCAGAAGCTTGTGAGCAACTCAATGAGAGAATAGCCCCTGATCATTTTTCAGACTGTTACAATTTACCAGATATCGTAAAGAGTTCGAGTAGTCGAAACAGAGTTTCTTGGTTGCAGTCTTGGTAG 1398 0.4063 MKTLSSLVDVFLVLALICCSSWTVWSSSSCKRINIKEVRPHSVSITEFGAVGDGITLNTKAFQNAIFYLNSYADKGGAKLFVPAGQWLTGSFNLISHLTLWLDKDAIILGSTNSEDWPIVDPLPSYGRGRELPGGRHRSLIYGRNLTDVIITGNNGTIDGQGSIWWSKFRNKTLNHTRPHLVELMNSTEVLISNVTFLNSPFWTIHPVYCSHVTVQNVTILAPFGSPNTDGIDPDSSDNVCIEDCYISTSDDLISIKSGWDEYGISFGRPSTNINIHRLTGRTTSAGIAIGSEMSGGVSEVHAEDIYIFDSRSAIRIKTSPGRGGYVKNVHISNMTLVNVDIAIRFTGLYGEHPDDSYDPDALPVIERITVKNVIGENINRAGLIQGIKGDNFVDICLLNITLNVSKKNPWNCSNVKGYSELVFPEACEQLNERIAPDHFSDCYNLPDIVKSSSSRNRVSWLQSW* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1602 465 Gene3D - 23 423 IPR012334 -
Mal1g1602 465 Pfam Glycosyl hydrolases family 28 135 417 IPR000743 GO:0004650|GO:0005975
Mal1g1602 465 SUPERFAMILY Pectin lyase-like 36 431 IPR011050 -
Mal1g1602 465 SMART pbh1 210 236 IPR006626 -
Mal1g1602 465 SMART pbh1 237 269 IPR006626 -
Mal1g1602 465 SMART pbh1 271 292 IPR006626 -
Mal1g1602 465 SMART pbh1 298 319 IPR006626 -
Mal1g1602 465 SMART pbh1 327 348 IPR006626 -
Mal1g1602 465 PANTHER OS07G0245200 PROTEIN 7 451 - -
Mal1g1602 465 PANTHER PECTIN LYASE-RELATED 7 451 - -
Mal1g1602 465 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1602 Mal-Chr1 20896490 20901532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1602 1 465 Glycoside Hydrolase AT3G62110 68.499 0.0 645
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1602 - - mtr:MTR_1g086030 865.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g1602 1 20896490 20901532 Mal1g1602 1 20896490 20901532 ECH
Mal3g4758 3 127581975 127584806 Mal1g1602 1 20896490 20901532 PCT