Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4290 ATGCGGTCTTGTGTTTCCTTGTTGGTGGCTTTGGCTGCAATGGCGGTGACGGTTACGGTTGTTTACGGCGGTTTTCCAGGGAGTTATCTTCATCTTGAACGGACCATCCCTCTTAACCACCAAGTTGAACTCACCACTCTCAAAGCTCGCGACAGTGCTCGTCACGGTCGAATCTTGCAAGGCGGTGGTAGTGGTGGCATTCTCGACTTCTCAGTCCAAGGAACCTCCGATCCTTACTTAGTTGGGTTGTATTTTACAAAAGTGAAGATGGGTTCTCCTGCTAAAGAATTTTACGTTCAGATTGATACGGGAAGTGATATATTATGGCTTAATTGCAATGCTTGCAGTAATTGCCCTCAATCTAGTGGGTTAGGGATTGAGCTTAATTTCTTTGACACGGCTAGTTCGTCCACTGCTGAACTGGTTTCCTGCTCGGATCCGGTATGTTCTTATGCGGTTCAAACTGCCACAAGTCAGTGCTCTTCTCAGGCTAATCAGTGCAGCTACACCTTTCAGTATGGGGATGGAAGTGGGACGTCTGGTTATTATGTTTCTGATGCTATGTATTTTGACGTGATCATGGGACAGTCTATGTTTTCTAATTCTTCATCTACCGTCGTTTTTGGGTGTAGCACCTATCAGTCTGGGGATTTGGCTCGGACAGAAAAGGCAGTTGATGGAATTTTTGGGTTTGGCCCCGGTGCTTTATCTGTCATATCACAATTGTCATCACAAGGCATGACACCCAAAGTATTCTCTCATTGCTTAAAGGGAGAGGGAAGTGGAGGAGGCATACTAGTTTTTGGTGAAATTTTAGAGCCAAATATTGTTTATACTCCACTTGTTCCATTACAGCCTCATTATAATTTAAATCTTCAAAGCATTGCTGTCAGTGGACAAATTCTCCCAATCGATCAAGATGTATTTGCAACAGGTAACAATCGAGGAACTATTGTTGATTCTGGTACTACATTGGCATACCTTGTTCAAGAAGCTTATGATCCTTTTCTCAATGCTATAACTACCACTGTGTCACAGTTTTCCAAACCCATTATATCAAAAGGAAACCAGTGTTATCTGGTCCCAACCAGCCTAGGTGATATATTTCCTCAAGTCAGTTTAAATTTCATGGGTGGAGCATCCATGATTTTAAAACCAGAACAGTATCTTATGCATTATGGTTTCCTGGATGGTGCTGCAATGTGGTGCATTGGTTTTCAAAAAGTGCAGAAGGGATTCACAATTTTAGGAGATCTTGTTCTAAAAGATAAGATTTTTGTATACGACGTAGCTAACCAACGAATTGGATGGACCGACTATGATTGTTCCTTGGCCGTAAATGTCTCTGTGGCTACAAGCAAGAGTAAGGATGCATACCTCAGTGCAGGACAGATGAGTGTTAGCTCCTCAGACGTCAGCATTCTCTCCAAGTTGCAACTTGTAAGGATTGTGGCTTTTCTTGTGCATATAATAGTTTTCATGGAGCCCCAGTTTTTGTAG 1500 0.4267 MRSCVSLLVALAAMAVTVTVVYGGFPGSYLHLERTIPLNHQVELTTLKARDSARHGRILQGGGSGGILDFSVQGTSDPYLVGLYFTKVKMGSPAKEFYVQIDTGSDILWLNCNACSNCPQSSGLGIELNFFDTASSSTAELVSCSDPVCSYAVQTATSQCSSQANQCSYTFQYGDGSGTSGYYVSDAMYFDVIMGQSMFSNSSSTVVFGCSTYQSGDLARTEKAVDGIFGFGPGALSVISQLSSQGMTPKVFSHCLKGEGSGGGILVFGEILEPNIVYTPLVPLQPHYNLNLQSIAVSGQILPIDQDVFATGNNRGTIVDSGTTLAYLVQEAYDPFLNAITTTVSQFSKPIISKGNQCYLVPTSLGDIFPQVSLNFMGGASMILKPEQYLMHYGFLDGAAMWCIGFQKVQKGFTILGDLVLKDKIFVYDVANQRIGWTDYDCSLAVNVSVATSKSKDAYLSAGQMSVSSSDVSILSKLQLVRIVAFLVHIIVFMEPQFL* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4290 499 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 5 461 - -
Mal3g4290 499 SUPERFAMILY Acid proteases 79 444 IPR021109 -
Mal3g4290 499 ProSiteProfiles Peptidase family A1 domain profile. 84 438 IPR033121 -
Mal3g4290 499 PRINTS Pepsin (A1) aspartic protease family signature 317 328 IPR001461 GO:0004190|GO:0006508
Mal3g4290 499 PRINTS Pepsin (A1) aspartic protease family signature 414 429 IPR001461 GO:0004190|GO:0006508
Mal3g4290 499 PRINTS Pepsin (A1) aspartic protease family signature 90 110 IPR001461 GO:0004190|GO:0006508
Mal3g4290 499 Pfam Xylanase inhibitor N-terminal 84 269 IPR032861 -
Mal3g4290 499 Gene3D Acid Proteases 271 448 IPR021109 -
Mal3g4290 499 CDD pepsin_A_like_plant 84 442 IPR034161 -
Mal3g4290 499 Gene3D Acid Proteases 68 270 IPR021109 -
Mal3g4290 499 PANTHER ASPARTYL PROTEASES 5 461 IPR001461 GO:0004190|GO:0006508
Mal3g4290 499 Pfam Xylanase inhibitor C-terminal 287 438 IPR032799 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4290 Mal-Chr3 122204359 122209315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4290 79 443 Miscellaneous Gene Families AT1G44130 28.351 6.24e-41 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4290 - - gmx:100804147 773.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4290 3 122204359 122209315 Mal3g4290 3 122204359 122209315 ECH
Mal3g4290 3 122204359 122209315 Mal1g3171 1 49001978 49006579 PCT