Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g3171 ATGCGGTTTTACATTCCAACGTTGTTCTTCTTCTTCTTGGGATGCTGCATGGTGGCGGTGTGCAGCGGAGGTTACCTCCCTCTACAGCGAGCTATTCCGCTTAGCCACCGTGTTGAATTGGATGCGCTCAGAGCTCGTGACAGAGCTCGCCATGGAAGATTCTTGGGTGGTGGTGTTGTTGATTTCAGAGTTCAAGGCACCGCCGATCCATATTCTGTTGGGTTGTATACTGCCAAAGTAAAGATGGGAACTCCACCAAGGGAATTTACTGTTCAGATTGATACTGGAAGTGACATTTTGTGGATCAATTGCAATACTTGCAGTAACTGCCCTAAATCTAGTGGACTTGGGATTGAGCTCAATTTCTTTGACACGGTTGGTTCGTCCACGGCTGCGCTGCTTCCTTGCTTGGACCCCATGTGCACTTCTGGGATTCAAGATGCGTCAGCTCAATGCTCCGTTAATCAGTGCATCTACACCTTTCGGTATGAAGATGGGAGTGGTACTTCGGGTATTTATGTCTCTGATACTATGTATTTTGACATGATTCTCGGGCAATCTACTCCAGGCAATGTTAGTTCTTCAGCTACCATTGTTTTTGGGTGTAGTACCTCTCAGTCTGGAGATTTGACTAAGACGGATAAAGCGGTCGATGGAATTCTTGGCTTTGGCCATGGTGATCTATCTGTTATATCACAATTGTCATCACGAGGAATAACACCCAAAGTTTTCTCTCATTGCTTGAAAGGGGATGGCGAGGGAGGAGGCATTCTAGTTCTTGGTGAGATTATGGAGCCAAGTATTGTTTATAGTCCACTTGTCCCATCGCAGCCTCATTACAACTTAAATCTTCAGAGCATTGCTGTCAATGGGCAACTTCTCTCAATTAATCCAGCTGTATTTGCAACATCTGACAGACGAGGAACTATCGTTGACAGTGGTACAACATTGTCATATCTTGTTCAAGAAGCTTATGATCCTCTTGTCAATGCAGTAAATACTGCTGTGTCACAAATTACTACTCCCTTTATTTCAAAAGGAAACCAGTGTTATCTGGTCTTAACCAGTGTAGATGATACTTTTCCCACAATCAGTTTAAACTTTGAGGGTGGAGCATCAATGAATTTAAAACCATCACAGTACCTTTTGCATAGTGGTTTCCAGGACGGTGCTGCAATGCGGTGCATAGGTTTCCAGAAAGTGCAAGAAGGAGTCACAATTTTAGGAGATCTTTTCCTGAAAGATAAGATAATTGTCTATGACTTGGTTCGTCAGCGAATAGGATGGACTAACTATGATTGTTCCATGTCTGTAAACGTCTCGGTGACTTCTAGCAAGGATGAGTACATCAATGCAAGGGCAAGACAGACGAGTGTTAGCAGCTCGAAGATAGAGACTCTCTCCAAGTTACTACCTGTAAGCATTGTGGCTCTTTCTATGCACATAATAATCTTCATGGAGTCATTACATTTGTAA 1476 0.435 MRFYIPTLFFFFLGCCMVAVCSGGYLPLQRAIPLSHRVELDALRARDRARHGRFLGGGVVDFRVQGTADPYSVGLYTAKVKMGTPPREFTVQIDTGSDILWINCNTCSNCPKSSGLGIELNFFDTVGSSTAALLPCLDPMCTSGIQDASAQCSVNQCIYTFRYEDGSGTSGIYVSDTMYFDMILGQSTPGNVSSSATIVFGCSTSQSGDLTKTDKAVDGILGFGHGDLSVISQLSSRGITPKVFSHCLKGDGEGGGILVLGEIMEPSIVYSPLVPSQPHYNLNLQSIAVNGQLLSINPAVFATSDRRGTIVDSGTTLSYLVQEAYDPLVNAVNTAVSQITTPFISKGNQCYLVLTSVDDTFPTISLNFEGGASMNLKPSQYLLHSGFQDGAAMRCIGFQKVQEGVTILGDLFLKDKIIVYDLVRQRIGWTNYDCSMSVNVSVTSSKDEYINARARQTSVSSSKIETLSKLLPVSIVALSMHIIIFMESLHL* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g3171 491 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 15 - -
Mal1g3171 491 PANTHER ASPARTYL PROTEASES 22 453 IPR001461 GO:0004190|GO:0006508
Mal1g3171 491 CDD pepsin_A_like_plant 76 434 IPR034161 -
Mal1g3171 491 Pfam Xylanase inhibitor N-terminal 76 261 IPR032861 -
Mal1g3171 491 ProSiteProfiles Peptidase family A1 domain profile. 76 430 IPR033121 -
Mal1g3171 491 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 22 453 - -
Mal1g3171 491 PRINTS Pepsin (A1) aspartic protease family signature 309 320 IPR001461 GO:0004190|GO:0006508
Mal1g3171 491 PRINTS Pepsin (A1) aspartic protease family signature 406 421 IPR001461 GO:0004190|GO:0006508
Mal1g3171 491 PRINTS Pepsin (A1) aspartic protease family signature 82 102 IPR001461 GO:0004190|GO:0006508
Mal1g3171 491 Gene3D Acid Proteases 60 262 IPR021109 -
Mal1g3171 491 Pfam Xylanase inhibitor C-terminal 279 430 IPR032799 -
Mal1g3171 491 Gene3D Acid Proteases 263 441 IPR021109 -
Mal1g3171 491 SUPERFAMILY Acid proteases 71 438 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g3171 Mal-Chr1 49001978 49006579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g3171 60 435 Miscellaneous Gene Families AT1G44130 26.952 2.26e-41 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g3171 - - gmx:100820394 684.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g3171 1 49001978 49006579 Mal1g3171 1 49001978 49006579 ECH
Mal3g4290 3 122204359 122209315 Mal1g3171 1 49001978 49006579 PCT