Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4250 ATGTTCAAAAGAATAATGAAAGGAGGGCAAAAGAAGCCCTCCAAATCTGATTCAGCCGACGGATACGGTCCGCCGGCGTACACCACCGCCAATCCATCTTCCACGGTGGTCGTACCACCACCGTCAGGAACAATCGAAGCGCTTCCATTATTCCGCGATGTACCGGTTCCCGAGAGACAGAATTTGTTTCTCCGGAAGCTTCAGATTTGTTGCCATACTTTGGATTTCACCGATACGTTGAAATCAGTTCGGGAGAAAGAAATCAAGAGACAAACGTTGATGGAATTGGTTGAATTTATTCAATCTGGTTCGAGTAAGATAACGGAGATTTGTCAAGAAGAGATGATTAAAATGGTTTCGGTGAATATTTTCCGGTGTCTTCCACCGGCGTATCATGAGAATACCGGACAAGATTCCGCGGATCCGGAAGAGGAGGAGCCGTGTTTGGAGCCGGCGTGGCCTCATTTGCAGCTTGTTTATGAGCTTCTGCTTAGATATGTGGTTTCATCTGATACTGATACAAAAGTAGCAAAACGTTACATTGATCATTCATTTGTGCTTAAATTGCTTGATTTGTTTGATTCTGAGGATCCTAGAGAGCGCGAATATGTGAAAACGATATTGCATCGTGTTTATGGAAAATTTATGGTTCATAGACCGTTTATTAGGAAGGCGATTAATAACATATTTTATCGGTTTATTTATGAGACTGAGAGACATAGTGGGATTATGGAGCTTCTTGAGATTCTTGGGAGTATAATTAATGGGTTTGCGTTGCCGATGAAGGAAGAGCATAAGCTGTTTCTTGTGCGAGCGTTGTTGCCTTTGCATAAACCGAAACCTGTTGCTGTTTACCATCAGCAGTTGTCTTACTGCATCTCTCAGTTTGTTGAGAAGGACTTTAAGCTAGCGGATACTGTTATTAGGGGTTTGTTGAAGTACTGGCCGGTGACTAATTGTCAGAAGGAAGTTCTTTTTCTCGGAGAGCTGGAGGAGGTGCTGGAGGCTACGCAAGCTGCGGAGTTCCAACGCTGTATGGTTCTTCTTTTTAGACAGATTGCTCGCTGCCTCAATAGTCCGCACTTTCAGGTCGCAGAACGAGCCCTCTTTTTGTGGAATAACGAGCACATTGTCAGTTTAATTGCCCAAAACAGGACTGTAATATTACCCTTAATATTTGAAGCATTGGAGAAAAATGTCCAGAGTCATTGGAACCCGGCTGTTAATGGGTTGACTGTGAATGTTAGGAAAATGTTCCTGGAAATGGATGCTGAATTGTTTGAAGAGTGCCAGAAGCAGTATTTGGAACGAGAGGCTAAAGCCAAAGAGGTGGAAGAGCTGCGAGAATTGAATTGGAAGAGGCTGGCAGATGCCGCTGCACAGAATGGGGCGGATATGGTCACAGCTTAG 1410 0.4404 MFKRIMKGGQKKPSKSDSADGYGPPAYTTANPSSTVVVPPPSGTIEALPLFRDVPVPERQNLFLRKLQICCHTLDFTDTLKSVREKEIKRQTLMELVEFIQSGSSKITEICQEEMIKMVSVNIFRCLPPAYHENTGQDSADPEEEEPCLEPAWPHLQLVYELLLRYVVSSDTDTKVAKRYIDHSFVLKLLDLFDSEDPREREYVKTILHRVYGKFMVHRPFIRKAINNIFYRFIYETERHSGIMELLEILGSIINGFALPMKEEHKLFLVRALLPLHKPKPVAVYHQQLSYCISQFVEKDFKLADTVIRGLLKYWPVTNCQKEVLFLGELEEVLEATQAAEFQRCMVLLFRQIARCLNSPHFQVAERALFLWNNEHIVSLIAQNRTVILPLIFEALEKNVQSHWNPAVNGLTVNVRKMFLEMDAELFEECQKQYLEREAKAKEVEELRELNWKRLADAAAQNGADMVTA* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4250 469 SUPERFAMILY ARM repeat 60 441 IPR016024 -
Mal3g4250 469 MobiDBLite consensus disorder prediction 1 35 - -
Mal3g4250 469 Gene3D - 55 458 IPR011989 -
Mal3g4250 469 PANTHER PROTEIN PHOSPHATASE 2A REGULATORY B SUBUNIT FAMILY PROTEIN 1 466 - -
Mal3g4250 469 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 48 459 IPR002554 GO:0000159|GO:0007165|GO:0019888
Mal3g4250 469 PIRSF PP2A_B56 8 468 IPR002554 GO:0000159|GO:0007165|GO:0019888
Mal3g4250 469 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 466 IPR002554 GO:0000159|GO:0007165|GO:0019888
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4250 Mal-Chr3 121788891 121794226 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4250 K11584 - gmx:100798308 828.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4250 3 121788891 121794226 Mal3g4250 3 121788891 121794226 ECH
Mal3g4250 3 121788891 121794226 Mal1g3118 1 47345042 47349849 PCT