Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4218 ATGTTTTCTCCGTCTACACCATTTCCTTCAAGAATTCTTCCTACTTCAACTTCAGTTATGATGCCTCACGAGCAAGCTGCTCCTGCGGTTTCTTCTCGGCCTTCTAGTTTTTCTGCTCAGTATTTTCCTACCTCAGTTCTTTTACAAGAGCATCGCGATGAGTATAAGCCTCTACTTCATATGTATAAAGAAGACAAGACATCCCAGGCAACCTTAAATACAAGGGTAACGGATGTGACCTCAATTTGTGAGAAAATCAACACTGGCGATGTTGATGAGTCGACGCATAACTGTATGCAGCAGTTGCATCTTCGGTGTCATTTACAGAACTTATTGACTTCTTCGCCGGAAGAGGATTCCGTTTCTTCTTCCTCAACTATGCAACCTGCTGATGATTTCCAATGGGATGCCCTTACTCTTGCTAAGCAAGCTCTATCAGCCTCAAAACAAGCCGCTGCAGTGGCTGAAGAGTTAAAATTGATTAAAGTTGACGATGATAATGATGATGATTCAGTACCTCTTGGTCTGGCCGACTCTTCACTTGGAAAGAACAAAATTGTAAGGTCAATACGGCTTAAAGAAAGGCGATCTAAACAGAGAAAAGTGTCAAACTCAAAAGTTCTTGATGACGAAAAGTACCTTGCTAAAAAATCTGATGTACAAAGACGGTTACGTGTAGAGAAAAAGTTAAAAGAAGGACTTGACAGAAACGATGCCCTGCGCTTGTTCTTATGGAGTCCTGAAACAAAGCAACTTTTGAACGTTGAAGAAGAATCTCAATTGATTGTTCAGATACAGGATTTATTTAAATTGAAAGAAACAAAGATCAAACTTCAGTCTCAGTTTGGAAGGGAACCAACTTTGGCTGAATGGGCAGATGGTGTGGGCCTTAGCTGTCGTGACCTTCAGAAACGGCTTCATTGTGGTAACAGAAGCAAAGATAAGCTGATTAATGCCAACTTACGCCTGGTAGTTCACATTGCTAAATATTATCAGGGGCGTGGTCTAAGCCTTCAGGACTTATTGCAGGAGGGAAGTATGGGCCTTATGAGGAGTGTCGAAAAGTTCAAACCCCAAGCTGGTTGCCGGTTCAGTACTTACGCTTACTGGTGGATAAGGCAAACAATAAGGAGGGCCTTATTTCTACATTCCAAAACAATCCGTCTGCCGGAGAATTTTTACACCCTTTTGGGCAAGGTTGCGGAAGCAAAGAAATCGTACATTAAAGAAGGAAATCTTCACCCCTCGAAAGAAGAAATAGCAAAACGAGTAGGAATTACAGTAGATAAGTTGGAAATGTTGCTATTTTCTACAAGAACTCCGCTTTCGATGGAGCGAGCTGTGTGGGCAGACCAGGACACAACATTCCAGGAGATTACTGCAGACTCTGCAATTGAGATCCCAAATGTATGTGTTGCAAAACAACTAATGAGGAGCCATGTACGCAACCTCCTAAGTATTTTGAGTCCAAAAGAAAGGCGGGTAATCAGGCTAAGATTCGGTATTGAGGATGGCTATGCGAAATCTTTGTCAGAAATTGGCAAGGTATTGGGTCTGTGTAAGGAGAGGGTCAGGCAATTGGAGAGCAAAGGATTGAACAAGCTCAAGCAGAGCATTGTTAGTCAACAACTTGATGCATATGTAGACTTGATTGTATAG 1659 0.4207 MFSPSTPFPSRILPTSTSVMMPHEQAAPAVSSRPSSFSAQYFPTSVLLQEHRDEYKPLLHMYKEDKTSQATLNTRVTDVTSICEKINTGDVDESTHNCMQQLHLRCHLQNLLTSSPEEDSVSSSSTMQPADDFQWDALTLAKQALSASKQAAAVAEELKLIKVDDDNDDDSVPLGLADSSLGKNKIVRSIRLKERRSKQRKVSNSKVLDDEKYLAKKSDVQRRLRVEKKLKEGLDRNDALRLFLWSPETKQLLNVEEESQLIVQIQDLFKLKETKIKLQSQFGREPTLAEWADGVGLSCRDLQKRLHCGNRSKDKLINANLRLVVHIAKYYQGRGLSLQDLLQEGSMGLMRSVEKFKPQAGCRFSTYAYWWIRQTIRRALFLHSKTIRLPENFYTLLGKVAEAKKSYIKEGNLHPSKEEIAKRVGITVDKLEMLLFSTRTPLSMERAVWADQDTTFQEITADSAIEIPNVCVAKQLMRSHVRNLLSILSPKERRVIRLRFGIEDGYAKSLSEIGKVLGLCKERVRQLESKGLNKLKQSIVSQQLDAYVDLIV* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4218 552 Pfam Sigma-70, region 4 484 537 IPR007630 GO:0003700|GO:0006352|GO:0006355
Mal3g4218 552 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 10 552 - -
Mal3g4218 552 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 237 385 IPR013325 GO:0003700|GO:0006352|GO:0006355
Mal3g4218 552 Pfam Sigma-70 region 3 396 468 IPR007624 GO:0003700|GO:0006352|GO:0006355
Mal3g4218 552 ProSitePatterns Sigma-70 factors family signature 1. 340 353 IPR000943 GO:0003700|GO:0006352|GO:0006355
Mal3g4218 552 Pfam Sigma-70 region 2 316 380 IPR007627 GO:0003700|GO:0006352|GO:0006355
Mal3g4218 552 Gene3D - 471 551 IPR036388 -
Mal3g4218 552 PANTHER RNA POLYMERASE SIGMA-70 LIKE DOMAIN, RNA POLYMERASE SIGMA-B/F/G TYPE-RELATED 10 552 - -
Mal3g4218 552 PRINTS Major sigma-70 factor signature 488 500 IPR000943 GO:0003700|GO:0006352|GO:0006355
Mal3g4218 552 PRINTS Major sigma-70 factor signature 364 372 IPR000943 GO:0003700|GO:0006352|GO:0006355
Mal3g4218 552 PRINTS Major sigma-70 factor signature 524 535 IPR000943 GO:0003700|GO:0006352|GO:0006355
Mal3g4218 552 PRINTS Major sigma-70 factor signature 340 353 IPR000943 GO:0003700|GO:0006352|GO:0006355
Mal3g4218 552 PRINTS Major sigma-70 factor signature 509 524 IPR000943 GO:0003700|GO:0006352|GO:0006355
Mal3g4218 552 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 314 538 IPR014284 GO:0003700|GO:0006352|GO:0006355
Mal3g4218 552 Gene3D - 389 466 IPR036388 -
Mal3g4218 552 CDD Sigma70_r4 478 536 - -
Mal3g4218 552 PIRSF Sigma_factor_SigC 3 552 IPR016262 -
Mal3g4218 552 Gene3D - 80 385 - -
Mal3g4218 552 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 389 462 IPR013324 -
Mal3g4218 552 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 449 548 IPR013324 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4218 Mal-Chr3 121322339 121327703 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4218 - - aip:107648612 706.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4218 3 121322339 121327703 Mal3g4218 3 121322339 121327703 ECH
Mal1g3073 1 45702462 45708524 Mal3g4218 3 121322339 121327703 PCT