Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g3073 ATGGAATCTGCAAGGAGTATGTTTTGTTCTTCTCCACCGTTTCCTCCAAGAACTCACCACTGGAACACTCTTCCTTCATCTTCTTATACTTCTGTTTTGATGCTCCGGGAACAAGTTGCGCCTACAGTCACCGCCTGGTGTACTAGTTTTTCATCTCAGAATTTTCCTACTTCAGTTCTTTTACAAGAGCAGTGTGATGAGTATAGGCCTCTATTGCATATTTCTAAGAAGGACAAGACATGTCAGGCAACATTAAATACAAAGCAGATGGATATGGTCTCGGTTCAAGAAGAGAATGACACCGGCAACACTGATCAGATAGCACGTGACTTCAGGCAGCACCTGCATCTCTTGCCTCGTTTAGAGAACTTATTAACTTCCTCACAAACAGGAGAAATGGATGGTTCTTCAACTTTACAACATGGAGATAGTTTGGAGTGTAATGCACTTTATCCCTCAAAACAAGCAGCCTCGGTAACTGAAAACTTGATATCAATTAAAGCTGACGAGGATGCTGACAATTCAATTCCTTTTGGTCTAGCCTCTTCCAGTTCGGCTGAACCTTTACTTGGAGGCAATAAAACCGTAAGGTCAACACGACTTCGAGAGAGACGAGCAAAAGAGAGAAAGATACCGAAGTCAAAAGTTAAAGACAGCGAAACTTACCTCGCCGGAAAAGATACTGCACAGGAAAAGCTACATGTACAAAACAAGATAAATAAAGGAATGAATCAAAACGATCCATTGAACAAGTTCCTGCAGAGTCCTGAATCGAAGCAACTTTTGTCTTCTGAACAAGAGTCTCAGTTGGTTGCTCAGATACAGGAATTATTGAGATTGGAAGAATTGAAGACAACTCTTCAATCTCAATTTGGAAGGGAACCGACTATGGCTGAATGGGCTGAGGGTGCAGGGCTTAACTGTCGGAAACTGAAGGTGCAACTTCGTTGTGGTAACAGAAGCAGAGAAAAATTGATTCAATCAAATTTACGCATGGTACACTACGTTGCTAAAAGTTACCAAGGGCGTGGTCTCAGCATTGAAGACTTATTACAGGAGGGAAGCACAGGTCTCATAAAGAGTGTTAAAAAGTTTAAACCCCAAGCCGGGTGCCGATTTGCTACTTATGCGTACTGGTGGATAAAACAAGCAATGAGGAAAGCCATATATCAACATTCCAGGACAATCCGTCTACCGGAGAAGATATATAACAAACTTAGCAAGGTATTGGAGGCAAAGAAATTGTACATGGAAGAGGGAAATCTTAACCCTACCAAAGAAGAATTAGCAAGAAGGGTAGGAATTTCACCAGAAAAGGTTGACAAGTTACTATTTGTTGCAAGAATTCCAATTTCTATGCAGAACACTGTGGGGGCTGAGACAGATACAACTTTCCAGGAGGTTACTGCAGACACTGCTATCGAGAGCCCAGATATGAATGTTTCAAAACAGCTTATGAGACGACATGTGCTCAACATCTTAAATATCTTACGCCCTAAAGAAAGGAGGATAGTTCGGCTAAGATTTGGTTTTGAGGATGGAGAACAGAGATCTTTATCAGAAATCGGGGAAATATTTGGTTTATCTAGAGAAAGGGTCCGTCAATTGGAGAGCCGGGCACTCTACAAGCTCAAGAAGTGTCTTGTCAATCAAGGACTAGATGCTTATGCAGACTTGCTTATATAG 1686 0.4164 MESARSMFCSSPPFPPRTHHWNTLPSSSYTSVLMLREQVAPTVTAWCTSFSSQNFPTSVLLQEQCDEYRPLLHISKKDKTCQATLNTKQMDMVSVQEENDTGNTDQIARDFRQHLHLLPRLENLLTSSQTGEMDGSSTLQHGDSLECNALYPSKQAASVTENLISIKADEDADNSIPFGLASSSSAEPLLGGNKTVRSTRLRERRAKERKIPKSKVKDSETYLAGKDTAQEKLHVQNKINKGMNQNDPLNKFLQSPESKQLLSSEQESQLVAQIQELLRLEELKTTLQSQFGREPTMAEWAEGAGLNCRKLKVQLRCGNRSREKLIQSNLRMVHYVAKSYQGRGLSIEDLLQEGSTGLIKSVKKFKPQAGCRFATYAYWWIKQAMRKAIYQHSRTIRLPEKIYNKLSKVLEAKKLYMEEGNLNPTKEELARRVGISPEKVDKLLFVARIPISMQNTVGAETDTTFQEVTADTAIESPDMNVSKQLMRRHVLNILNILRPKERRIVRLRFGFEDGEQRSLSEIGEIFGLSRERVRQLESRALYKLKKCLVNQGLDAYADLLI* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g3073 561 PRINTS Major sigma-70 factor signature 518 533 IPR000943 GO:0003700|GO:0006352|GO:0006355
Mal1g3073 561 PRINTS Major sigma-70 factor signature 533 544 IPR000943 GO:0003700|GO:0006352|GO:0006355
Mal1g3073 561 PRINTS Major sigma-70 factor signature 349 362 IPR000943 GO:0003700|GO:0006352|GO:0006355
Mal1g3073 561 PRINTS Major sigma-70 factor signature 373 381 IPR000943 GO:0003700|GO:0006352|GO:0006355
Mal1g3073 561 PRINTS Major sigma-70 factor signature 497 509 IPR000943 GO:0003700|GO:0006352|GO:0006355
Mal1g3073 561 ProSitePatterns Sigma-70 factors family signature 2. 518 544 IPR000943 GO:0003700|GO:0006352|GO:0006355
Mal1g3073 561 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 321 548 IPR014284 GO:0003700|GO:0006352|GO:0006355
Mal1g3073 561 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 457 556 IPR013324 -
Mal1g3073 561 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 4 561 - -
Mal1g3073 561 MobiDBLite consensus disorder prediction 189 219 - -
Mal1g3073 561 PANTHER RNA POLYMERASE SIGMA-70 LIKE DOMAIN, RNA POLYMERASE SIGMA-B/F/G TYPE-RELATED 4 561 - -
Mal1g3073 561 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 245 395 IPR013325 GO:0003700|GO:0006352|GO:0006355
Mal1g3073 561 Pfam Sigma-70 region 2 325 394 IPR007627 GO:0003700|GO:0006352|GO:0006355
Mal1g3073 561 Pfam Sigma-70, region 4 494 546 IPR007630 GO:0003700|GO:0006352|GO:0006355
Mal1g3073 561 Pfam Sigma-70 region 3 405 479 IPR007624 GO:0003700|GO:0006352|GO:0006355
Mal1g3073 561 Gene3D - 398 475 IPR036388 -
Mal1g3073 561 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 398 471 IPR013324 -
Mal1g3073 561 Gene3D - 219 394 - -
Mal1g3073 561 Gene3D - 476 548 IPR036388 -
Mal1g3073 561 CDD Sigma70_r4 487 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g3073 Mal-Chr1 45702462 45708524 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g3073 - - gmx:100306289 762.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g3073 1 45702462 45708524 Mal1g3073 1 45702462 45708524 ECH
Mal1g3073 1 45702462 45708524 Mal3g4218 3 121322339 121327703 PCT