Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3537 ATGGCCCTCCTAAGACATTTCTTCCTCTCATTCACTATCGTCATCATTTCATTTGTTGCTTGCAATAGCAACTTGCAAGAGGACCCACTTATTACTACATACGTTGATGATTCACCTTCCTATGATGATGGTGGTACATTTTTATTCAAGAACTTGATCAAGCAAAACACAAATAATGTTTTGAGCTTGGACCAGTTTGTTGGCACTTCACGTTCACTACAAATTGTTAATGTCAATGATTATGGAGCTAAAGGGAATGGTATTACTGATGACACAAAGGCATTCATGAAGGCTTGGGAAGTAGTATGTTCTTCAGGGGAAGCAATTTTTGTTGCACCTCAAGATAATAATTATCTACTCAAACCAATCAGATTTTCTGGTCCTTGCAAATCTAACATATCAGTCCAGATATCTGGAAGTCTTGAAGCATCAGATAATCCATCAGATTACAGTGAAGATCAAAGACATTGGCTTGTATTTCACAATGTTCAACAACTATTAGTTAATGGTGGTGGAACCATCGACGGAAAAGGAGACATATGGTGGCAAAACTCATGCAAAAGGAACAAAAAGAGACCTTGCAAGGATGCTCCCACGGCTCTAACATTTGATAATTGCGAGGACTTAATAGTTGAGAATTTGAAGATAGAAAATGCACAACAAATCCATGTTTCATTCCAAGATTCTATTAATGTTAAAGCTACTGGTCTCAATGTGTCATCACCCGGGAGTAGTCCTAACACCGATGGAATTCATGTCACAAATACCCAAAATATCAAAATCTCTAGCTCTGTCATAGGAACTGGTGACGATTGTATATCAATTGTACATGGATCTAGAAATGTAGAAGCCACAGACATAACATGTGGACCAGGCCATGGCATCAGTATTGGAAGTTTGGGTGCTGGAAAATCCAAGGACATTGTTTCGGGAGTTACAGTGAATGGAGCTAAGATTTCTGGAACTACAAATGGAGTTAGAATCAAGACATGGCCGGGAGGTTCAGGAAGTGCTAGCAACATCAAATTTCAAAACATTGAGATGAATAATGTGACCAACCCCATAATAATTGACCAGAATTATTGTGACAAGAAAAAAAAGCCATGCAAAAAAATGGACTCTGCAGTCCAAATTAGCAATGTGTTGTACCAGAATATAATAGGTACAAGTGCTTCTGATGTAGCTGTGAAGTTTGATTGCAGTGAGAAATTTCCATGCAAGGAGATAACAATGCAGAACATAGACTTGATATGTGAAGAAGGAGAAGCTGCTAAGTCTTTATGCAATAATGTTCAATTGTCTTACACAGGACATGTTGCTCCACGCTGCTACTCATAG 1338 0.3842 MALLRHFFLSFTIVIISFVACNSNLQEDPLITTYVDDSPSYDDGGTFLFKNLIKQNTNNVLSLDQFVGTSRSLQIVNVNDYGAKGNGITDDTKAFMKAWEVVCSSGEAIFVAPQDNNYLLKPIRFSGPCKSNISVQISGSLEASDNPSDYSEDQRHWLVFHNVQQLLVNGGGTIDGKGDIWWQNSCKRNKKRPCKDAPTALTFDNCEDLIVENLKIENAQQIHVSFQDSINVKATGLNVSSPGSSPNTDGIHVTNTQNIKISSSVIGTGDDCISIVHGSRNVEATDITCGPGHGISIGSLGAGKSKDIVSGVTVNGAKISGTTNGVRIKTWPGGSGSASNIKFQNIEMNNVTNPIIIDQNYCDKKKKPCKKMDSAVQISNVLYQNIIGTSASDVAVKFDCSEKFPCKEITMQNIDLICEEGEAAKSLCNNVQLSYTGHVAPRCYS* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3537 445 PANTHER - 7 444 - -
Mal3g3537 445 PANTHER ENDO POLYGALACTURONASE 7 444 - -
Mal3g3537 445 SMART pbh1 309 330 IPR006626 -
Mal3g3537 445 SMART pbh1 338 359 IPR006626 -
Mal3g3537 445 SMART pbh1 206 255 IPR006626 -
Mal3g3537 445 SMART pbh1 256 277 IPR006626 -
Mal3g3537 445 ProSitePatterns Polygalacturonase active site. 286 299 IPR000743 GO:0004650|GO:0005975
Mal3g3537 445 Gene3D - 60 442 IPR012334 -
Mal3g3537 445 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Mal3g3537 445 Pfam Glycosyl hydrolases family 28 109 432 IPR000743 GO:0004650|GO:0005975
Mal3g3537 445 SUPERFAMILY Pectin lyase-like 73 444 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3537 Mal-Chr3 112525894 112528720 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g3537 77 443 Glycoside Hydrolase AT3G07970 59.189 3.17e-149 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3537 K01184 - gmx:100797601 672.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g3537 3 112525894 112528720 Mal3g3537 3 112525894 112528720 ECH
Mal1g3791 1 75145786 75149956 Mal3g3537 3 112525894 112528720 PCT