Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g3791 ATGGCCCTCCAAAGATATCTCTCATTCATTATGATCATGATTTATTTTGTTGCTTGTTATAGTACTAACTTGCAAGAGGACCCACTTAGTTCAATTGTTGAGGATTCGCCTTATATAAATGATGGTGGAACATTCAAGGATTTTCTCAAGCAAAGTACAGATCATGTTTTGAGCTTAAAGAGCATGTTGGGTGACATTTCGCCTTCATCGGTTAAAATCTTTAATGTTGATGAATATGGAGCTCAAGGAGATGGTAAAACTGATGACACACAGGCATTCAAGAAGGTTTGGCAAGTAGCATGTTCTTCTAAGGAATCAGTTGTTGTGGTGGCTCAAAAGAATTATCTTCTTAAGCCAATCACATTCTCTGGCCCATGCAAATCCAAGAGTATCACAGTTCAGATCTCTGGAAGCCTTGTAGCATCAGATAACCCATCTGATTACAATCAAGACCCCACACACTGGCTTATGTTTGATAGTGTTCAGAAACTATCTCTTAAAGGTGGTGGAACTATTGATGGAAATGGAAATATTTGGTGGCAGAACTCATGCAAAACCAACAAAAAACTCCCTTGCAAGGATGCCCCTACGGCTTTGACTTTGTACAAGTGCAACAACTTGGTAGTTGAGGATTTGACTGTAAAAAATGGCCAACAAATTCATGTTCAATTCCAAAATTCTGGAAATGTTAGAGTTTCAGGTCTCACTGTGACAGCACCAGAGGACAGTCCAAACACGGATGGAATTCATGTCACCAATACTGAAAAAATCCAAATCTCAAACTCTATTATAGGAACTGGGGATGATTGTATATCAATTGTAAGTGGAACCAAGAATCTACAAGCTACAGACATAACTTGCGGACCAGGCCATGGTATCAGCATCGGAAGCTTAGGGGAAGGGGGCTCCAAGGAATTTGTTTCAGGAATAACGGTGAATGGAGCTAAATTTTCTGGCACCACTAATGGTGTAAGAATTAAGACATGGCAGGGTGGGTCAGGAAGTGCAAGCAACATCAAATTTCAGAACATTCAAATGGACAATGTAACTAACCCCATAATAATAGATCAGAACTACTGTGATCAACAGAGTCCATGCCAAAAACAGAAATCTGCTGTTCAAATAAGGAATGTGTTGTACCAGAACATAAAAGGCACAAGTGCTTCTGATGTGGCTATGCAATTTAATTGCAGCCAGAACTTTCCATGTCAGGGGATATTATTGCAAAATATAGATCTGCAACTTGAAGGTGGAGGAGAGGCTAAGGCTTCATGCAACAATGTGAAATTGTCATACAGAGGAAATGTTAGCCCTCGCTGCAATTACATAGAGGATATGCATCAACTTGGTAGCTTTGGAAAGACTTATAGTATGAATTAA 1380 0.3957 MALQRYLSFIMIMIYFVACYSTNLQEDPLSSIVEDSPYINDGGTFKDFLKQSTDHVLSLKSMLGDISPSSVKIFNVDEYGAQGDGKTDDTQAFKKVWQVACSSKESVVVVAQKNYLLKPITFSGPCKSKSITVQISGSLVASDNPSDYNQDPTHWLMFDSVQKLSLKGGGTIDGNGNIWWQNSCKTNKKLPCKDAPTALTLYKCNNLVVEDLTVKNGQQIHVQFQNSGNVRVSGLTVTAPEDSPNTDGIHVTNTEKIQISNSIIGTGDDCISIVSGTKNLQATDITCGPGHGISIGSLGEGGSKEFVSGITVNGAKFSGTTNGVRIKTWQGGSGSASNIKFQNIQMDNVTNPIIIDQNYCDQQSPCQKQKSAVQIRNVLYQNIKGTSASDVAMQFNCSQNFPCQGILLQNIDLQLEGGGEAKASCNNVKLSYRGNVSPRCNYIEDMHQLGSFGKTYSMN* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g3791 459 PANTHER ENDO POLYGALACTURONASE 5 446 - -
Mal1g3791 459 ProSitePatterns Polygalacturonase active site. 284 297 IPR000743 GO:0004650|GO:0005975
Mal1g3791 459 PANTHER - 5 446 - -
Mal1g3791 459 Pfam Glycosyl hydrolases family 28 102 429 IPR000743 GO:0004650|GO:0005975
Mal1g3791 459 SMART pbh1 336 357 IPR006626 -
Mal1g3791 459 SMART pbh1 204 224 IPR006626 -
Mal1g3791 459 SMART pbh1 254 275 IPR006626 -
Mal1g3791 459 SMART pbh1 227 253 IPR006626 -
Mal1g3791 459 SMART pbh1 307 328 IPR006626 -
Mal1g3791 459 Gene3D - 62 448 IPR012334 -
Mal1g3791 459 SUPERFAMILY Pectin lyase-like 70 442 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g3791 Mal-Chr1 75145786 75149956 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g3791 5 440 Glycoside Hydrolase AT3G57510 54.176 1.71e-155 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g3791 K01184 - gmx:100816917 644.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g3791 1 75145786 75149956 Mal1g3791 1 75145786 75149956 ECH
Mal1g3791 1 75145786 75149956 Mal3g3537 3 112525894 112528720 PCT