Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5560 ATGTCTTTCTTTTCCACTCTCAGAAAATCCACCTCACACTTCATCCACCATTTCTCAATCCAACGCTTCCAAATCCTCCACCAATCAACCTCATCTTCTTCACCGTCGCTACTCAACGCTCGCAACGGTGTTTTCGCCGCTATCATCGCCGGCACTAGTCTAGGGTTTCTTCTCTACACCACCGACTTTGACTCAACTCTCTTTCAATCCCCAATCTCTTCCTTCGTTGACCGGTCAACACCGTCTTCACCTTCGTTTTTCACGAAACTGTCCCTTCCTGATACTTCTGGAGCCTTCCTTTTTGGAGAAGCGTATAGGAGAAAAGTTTTCTTCAATTATGAGAAGCGCATTAGATTGCGAAGTCCTCCCGAGAAGGTTTTTGAATACTTTGCATCTCATCGATCACCAGAAGGAGAAGTACTCATGATACCAGCAGACCTAATGAGGGCTGTAGTTCCCGTTTTCCCTCCATCTGAATCTCACCTTGTTAGAGATGGATACTTGAGTGGAGAAAGAAGCCCTGGCCATTTACGCTGTTCTCCTTCAGAATTCTTTATGCTTTTTGATTTAAACAGTGACGGACTTATATCTTTTAAAGAGTATATCTTTTTTGTAACACTACTCAGCATCCCCGAATCAAGCTTCTCTGTGGCATTTAAAATGTTTGACGTCAACAATAATGGGGAGATAACTAAGGAAGAATTCAAGAAAGTGATGGGATTGATGCGATCACATCATCGACAGGGTGCTCAACACAGGGATGGACTGCGAACTGGACTAAAGGTGAATGATTCTGTGGAAAATGGAGGGCTGGTGGAATACTTTTTCGGTAAAGATGGAAAGGGTTCCCTCCAACTTGATAAATTCGTACAATTTTTGAGAGACTTGCATGATGAAATTCTGAGACTGGAGTTTGATCATTATGACTACAAATCTCAAAAAACAATTTCAGCCAAGGACTTTGCACTCTCCATGGTTGCTTCTGCCGACATCAGTCATCTAGGCAAGTTGCTTGAACGGGTTGATCAATTGAATAATGAGCCATGCTTTAAGGATGTTCACATCACATTTGAGGACTTCAAAAACTTTGCAGAGCTACGGAAAAAGTTATTTCCATTATCATTAGCCCTTTTTAGTTTTGGAAAAGTAAATGGCCTGTTGACGAAAGATGATTTTCAGCGAGCAGTGTCACATGTGTGCGGGATATCTATCTCGGACAATGTGGTTGAGATTGTTTTTCATTTGTTTGATACAAATCGTGACGGAAACCTAAGTACAGATGAGTTTGTCAGAGTGCTCCACAAGCGAGAAAGGGACATTGGACATCCTGTGGAGACAGGAATGTTGGGTTTGTTGTCTTGCTGCTGGAAATGTAAAGAAAACATATCTTCACGGTTCTTTTCCTGA 1407 0.4215 MSFFSTLRKSTSHFIHHFSIQRFQILHQSTSSSSPSLLNARNGVFAAIIAGTSLGFLLYTTDFDSTLFQSPISSFVDRSTPSSPSFFTKLSLPDTSGAFLFGEAYRRKVFFNYEKRIRLRSPPEKVFEYFASHRSPEGEVLMIPADLMRAVVPVFPPSESHLVRDGYLSGERSPGHLRCSPSEFFMLFDLNSDGLISFKEYIFFVTLLSIPESSFSVAFKMFDVNNNGEITKEEFKKVMGLMRSHHRQGAQHRDGLRTGLKVNDSVENGGLVEYFFGKDGKGSLQLDKFVQFLRDLHDEILRLEFDHYDYKSQKTISAKDFALSMVASADISHLGKLLERVDQLNNEPCFKDVHITFEDFKNFAELRKKLFPLSLALFSFGKVNGLLTKDDFQRAVSHVCGISISDNVVEIVFHLFDTNRDGNLSTDEFVRVLHKRERDIGHPVETGMLGLLSCCWKCKENISSRFFS* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5560 468 CDD EFh_MICU 215 436 - -
Mal1g5560 468 Gene3D - 146 256 - -
Mal1g5560 468 ProSitePatterns EF-hand calcium-binding domain. 417 429 IPR018247 -
Mal1g5560 468 ProSiteProfiles EF-hand calcium-binding domain profile. 404 439 IPR002048 GO:0005509
Mal1g5560 468 SUPERFAMILY EF-hand 275 367 IPR011992 -
Mal1g5560 468 SMART efh_1 214 242 IPR002048 GO:0005509
Mal1g5560 468 SMART efh_1 408 436 IPR002048 GO:0005509
Mal1g5560 468 SMART efh_1 180 208 IPR002048 GO:0005509
Mal1g5560 468 PANTHER EF HAND DOMAIN FAMILY A1,A2-RELATED 1 465 IPR039800 GO:0005509|GO:0006851
Mal1g5560 468 Pfam EF-hand domain pair 385 434 IPR002048 GO:0005509
Mal1g5560 468 ProSitePatterns EF-hand calcium-binding domain. 223 235 IPR018247 -
Mal1g5560 468 PANTHER CALCIUM UPTAKE PROTEIN, MITOCHONDRIAL 1 465 - -
Mal1g5560 468 Pfam EF hand 218 240 IPR002048 GO:0005509
Mal1g5560 468 Gene3D - 383 442 - -
Mal1g5560 468 ProSiteProfiles EF-hand calcium-binding domain profile. 210 245 IPR002048 GO:0005509
Mal1g5560 468 Gene3D - 266 374 - -
Mal1g5560 468 SUPERFAMILY EF-hand 183 434 IPR011992 -
Mal1g5560 468 Pfam EF hand 184 201 IPR002048 GO:0005509
Mal1g5560 468 CDD EFh 183 239 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5560 Mal-Chr1 131034051 131038679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g5560 47 401 EF-hand Containing Proteins AT4G32060 66.396 2.33e-169 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g5560 K22827 - gmx:100806575 680.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g5560 1 131034051 131038679 Mal2g0914 2 10568583 10571094 PCT