Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5528 ATGTCTCAAGTCTTCGGCTTTTCTGGTGATAACTTTTGCCATGGTGGGTTATACACAAACCCCAAGGAAGCAAATTTCTTCCTGTCTCTTGGCCCTCAAGTTGATGTCTACTATCCTCCTCAGAAAAGATCACGTGTCAGTGTTCCATTTGTTTTCGATGGAGAATGGTTTGAGCAGAAGCAGAAAACATCTATTGACTCTTTGCCAGATGAGTGCCTCTTTGAGATCTTAAGAAGGTTGCCTGTAGGTGAAGAAAGGAGCGCATCCGCTTGTGTTTCCAAACGCTGGCTTACACTTCTAAGCAATATTTGCAAGAGTGAAATCTGTAGCAACAAAAGTACCAGCTCAGATGACAAGAATAAAATGGAAAGTGACAGTGAAGAGTTTGGAGGTGAGGGATACCTTTCCCGGAGTTTGGAAGGAAAGAAGGCAACCGATGTTAGACTTGCTGCTATTGCAGTTGGAACTGCATCACGAGGAGGATTAGGGAAGCTTTCAATCCGTGGAAGCAACTCAGATCGCGGCGTGACAACTGTAGGTCTCAAAGCAGTTGCTAGTGGATGTCCTTCTCTAAAGTCTCTTTCTTTATGGAATGTTTCTTCCGTTGGTGATGAAGGCCTTATTGAGATTGCTAATGGATGTCAACAGCTAGAGAAGCTTGACCTTTGCAAATGCCCTGCAATTTCCGACAAGGCTTTAATCGCAGTTGCAAAGAAGTGCCCAAATCTGACCGAGTTATCATTAGAGTCATGTCCCAGCATTCACAATGAAGGTCTACAAGCCATTGGAAAGTTCTGCACCAATCTAAAGGCTATATCTATCAAGGACTGTGCCGGTGTTGGGGATCAAGGAATTGCTGGCCTGTTTTCTTCGCCTTCTTTGGTTCTGACAAAGGTGAAGCTTCAGGCACTGGCCGTTTCTGATCTCTCTCTAGCTGTTATTGGACATTATGGCAAAACAGTTACCGATCTTGTCCTTAATTTCCTCCCAAATGTTAGTGAGAGAGGCTTCTGGGTTATGGGAAGTGCTAATGGATTGCATAAACTGAAGTCACTCACAATTGCATCCTGCAGAGGAGTAACCGATGTTGGAGTTGAAGCTGTTGGAAAGGGCTGTCCTAATCTGAAAAACGTACACCTTCACAAGTGTGCATTTCTCTCAGACAACGGATTGATTTCATTCACCAAGGCTGCTATATCACTAGAAAGCCTACAATTGGAAGAGTGCCACAGAATTACCCAATTTGGGTTTTTCGGCGTCCTTTTTAACTGTGGTGCAAAATTGAAGGCTCTTTCTTTGGTAAGCTGCTATGGGATCAAGGATCTTGACTTGGAATTGTCGCCGGTATCTCCTTGTGAATCACTTCGTTCATTATCGATCTGTAACTGCCCTGGATTTGGGAACGCTACCCTTTCTGTACTTGGAAAGTTGTGCCCTCAGCTTCAACAAGTTGAATTGACTGGACTTAAGGGAGTGACAGATACTGGGTTGCTTCCACTGCTCGAGAGCTCTGAAGCTGGTCTTGTCAAAGTTAATCTTAGCGGTTGCGTAAATCTTACAGACAAAGTTGTTTCATCCCTGGTCAGTCTGCATGGTTGGACTCTTGAGGTTTTGAACCTCGAAGGTTGTAAAAACATTAGCAATGCTAGCTTGGTAGCAATTGCTGAACATTGCCAATTGCTTTGTGATCTTGATGTTTCCATGTGTGCGATCTCTGATGCTGGGATAGCTGTCCTGGCACATGCAAAACAGTTAAATCTACAGATTCTTTCTCTGTCAGGTTGCACTTTGGTTACAGACAGGAGCTTGCCTGCTTTGAGAAAATTGGGCCACACCCTTTTGGGACTAAATATCCAGCATTGCAATTCAATCAGCAGCAGCGCGGTTGAAATGCTTGTTGAACTTCTTTGGAGGTGTGACATCCTCTCTTGA 1932 0.442 MSQVFGFSGDNFCHGGLYTNPKEANFFLSLGPQVDVYYPPQKRSRVSVPFVFDGEWFEQKQKTSIDSLPDECLFEILRRLPVGEERSASACVSKRWLTLLSNICKSEICSNKSTSSDDKNKMESDSEEFGGEGYLSRSLEGKKATDVRLAAIAVGTASRGGLGKLSIRGSNSDRGVTTVGLKAVASGCPSLKSLSLWNVSSVGDEGLIEIANGCQQLEKLDLCKCPAISDKALIAVAKKCPNLTELSLESCPSIHNEGLQAIGKFCTNLKAISIKDCAGVGDQGIAGLFSSPSLVLTKVKLQALAVSDLSLAVIGHYGKTVTDLVLNFLPNVSERGFWVMGSANGLHKLKSLTIASCRGVTDVGVEAVGKGCPNLKNVHLHKCAFLSDNGLISFTKAAISLESLQLEECHRITQFGFFGVLFNCGAKLKALSLVSCYGIKDLDLELSPVSPCESLRSLSICNCPGFGNATLSVLGKLCPQLQQVELTGLKGVTDTGLLPLLESSEAGLVKVNLSGCVNLTDKVVSSLVSLHGWTLEVLNLEGCKNISNASLVAIAEHCQLLCDLDVSMCAISDAGIAVLAHAKQLNLQILSLSGCTLVTDRSLPALRKLGHTLLGLNIQHCNSISSSAVEMLVELLWRCDILS* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5528 643 SUPERFAMILY F-box domain 61 102 IPR036047 GO:0005515
Mal1g5528 643 SUPERFAMILY RNI-like 318 640 - -
Mal1g5528 643 Gene3D Ribonuclease Inhibitor 157 239 IPR032675 -
Mal1g5528 643 Gene3D - 58 106 - -
Mal1g5528 643 Gene3D Ribonuclease Inhibitor 240 445 IPR032675 -
Mal1g5528 643 SUPERFAMILY RNI-like 183 294 - -
Mal1g5528 643 SMART fbox_2 68 109 IPR001810 GO:0005515
Mal1g5528 643 PANTHER EIN3-BINDING F-BOX PROTEIN 1 15 634 - -
Mal1g5528 643 MobiDBLite consensus disorder prediction 111 132 - -
Mal1g5528 643 SMART LRR_CC_2 188 213 IPR006553 -
Mal1g5528 643 SMART LRR_CC_2 610 635 IPR006553 -
Mal1g5528 643 SMART LRR_CC_2 372 397 IPR006553 -
Mal1g5528 643 SMART LRR_CC_2 240 265 IPR006553 -
Mal1g5528 643 SMART LRR_CC_2 558 582 IPR006553 -
Mal1g5528 643 SMART LRR_CC_2 505 530 IPR006553 -
Mal1g5528 643 SMART LRR_CC_2 214 239 IPR006553 -
Mal1g5528 643 SMART LRR_CC_2 266 291 IPR006553 -
Mal1g5528 643 SMART LRR_CC_2 478 503 IPR006553 -
Mal1g5528 643 SMART LRR_CC_2 346 371 IPR006553 -
Mal1g5528 643 SMART LRR_CC_2 532 557 IPR006553 -
Mal1g5528 643 SMART LRR_CC_2 398 423 IPR006553 -
Mal1g5528 643 SMART LRR_CC_2 452 477 IPR006553 -
Mal1g5528 643 SMART LRR_CC_2 584 609 IPR006553 -
Mal1g5528 643 Pfam Leucine Rich repeat 558 580 IPR001611 GO:0005515
Mal1g5528 643 Pfam Leucine Rich repeat 239 262 IPR001611 GO:0005515
Mal1g5528 643 Pfam Leucine Rich repeat 347 368 IPR001611 GO:0005515
Mal1g5528 643 Pfam F-box domain 65 103 IPR001810 GO:0005515
Mal1g5528 643 Gene3D Ribonuclease Inhibitor 446 643 IPR032675 -
Mal1g5528 643 MobiDBLite consensus disorder prediction 112 130 - -
Mal1g5528 643 PANTHER UNCHARACTERIZED 15 634 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5528 Mal-Chr1 130367435 130370105 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g5528 K14515 - gmx:100820247 1059.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g5528 1 130367435 130370105 Mal1g5528 1 130367435 130370105 ECH
Mal1g5528 1 130367435 130370105 Mal2g0881 2 10199425 10202017 PCT