Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g3917 ATGTGGGCTCTTCGTCGAACTTCGATTCGCCTCACCCTAAGAAACCAAGGGATTAATAACAACAATTTAGGAACTTGTCGTGCTTCTTGTGTCAAATTAATTCCAAACACTTCGGTGGAATGTGAGGATGCTGTTCCTCATTCTCGATTTCTGTCAACGGGCCACCCTTTTTACCGCACAGCTCATGCTTCCCACAAATTTACTGTCACCAGCCGTCAACTTTCATCACAGGCTGATGCTGATGATGACATGGAGATTGAAGACCGGTTGACTGAGCCGGATGCAGATGCAGGTAGCGTTCATTGTGAAACAGATGGCGAAGAGGATGGTGGCAAACCACAAGATGATCTGGAGTTGTCGGATACTGAGAATGATTCACCACCTGACAGAAAATCACGGACTCCAAGGAATCGATCTGAACTATTCAATGCAGTTTCAGGTTTGTCCGTTGATTCTGCTCTCAACAAGTGGGTTCAACAAGGTAAAGAATTAAGCCGACAAGAGATCACATTGGCCTTGAATCATCTTAGAAGGCGTAAAATGTTTGGAAAGGCTTTACAGGTCTTGGATTGGCTAGAGTCAAACAAAAAGCTTGAATTTACTGAGAAAGAGTATGCTTCTAAACTTGATTTTATTGCCAAATTGCGCGGTCTACAAAATGCAGAAAAATACCTCGAGCATGTTCCAAATTCTTTCAGAGGAGAATTATTATACAGAACATTACTAGCTAACTGTGCTAGTCTGGAAAATTTGAGGAAAACGGAGGAAACATTCAACAAAATGAGGGAGTTAGGTTTTCCTGTTACATCATTTGCTTGTAACCAGTTGCTTCTCATTTATAAGAAGGTTGACAAGAAGAAAATAGCTGACGTGTTACTTATGATGGAAAAGGAGAATGTCAAACCTTCTCCTTTTACTTATAAAATTTTAATAGACGTGAAGGGCCTGTCTAATGATATTGATGGAATGTCTCAAATTGTTGAGACAATGAAGGCAGAAGGTGTTGAACCAGACCATCAAACACAGGCGTCCTTGGCTAGGCATTATGCCTCAGCCGGGCTTACAGAAGAAAGTGAAGCTATATTGAAGGAGATTGAAGGTGAAAACTTGAAAGATAATATGTGGGTATGCCCAACTTTGCTCCGCATTTATGCTATTCTGGGTAGGGCTGATGAAGTGGAGCGAATTTGGAAGGTTTGTGAGTCGAAGCCTCAGGTTGAGAACTGCCTTGCTGCAGTTGAAGCTTGGGGAAGGTTGAAGAAAATTGAAGAAGCAGAGGCAGTTTTTGAGATGATGTCAAATAAATGGAAACTTACTTCCAAGAACTACTCTGCACTCCTGAAAATTTATACAAGGCATAAGATGCTAGACAAGGGTAGGGATCTTATTAAGAAAATGGGAGATAGTGGGTGCATAATAGGTCCAGTTACCTGGGATGCACTTGTGTCTCTTTATGTTCAAGCAGGGGAAGTTGAAAAGGCAGACTCTGTTTTGCAGAAGGCACTACAGCAGAATAAGATGAAGCCATTGTTTACTACTTACATGACTATTATGGAGCAGTATGCAAAGAGGGGCGACGTCCATAATGCAGAGAAGATTTTCTATAGATTGAGACAAGCTAATTATATTTCTAGAATAACTCCGTTTCATGCTCTAGCACAGGCTTATAAAAACGCCAAACTACCAGCATATGGGATCAGGGAGAGGATGAAAGCTGATAACCTATTCCCCAACAAAGCTTTGGCTGGCCAGTTGGCTCTGGTTGATCCGTTTAGGAAAACTGCAGTTTCCGATTTGCTTGACTGA 1806 0.4169 MWALRRTSIRLTLRNQGINNNNLGTCRASCVKLIPNTSVECEDAVPHSRFLSTGHPFYRTAHASHKFTVTSRQLSSQADADDDMEIEDRLTEPDADAGSVHCETDGEEDGGKPQDDLELSDTENDSPPDRKSRTPRNRSELFNAVSGLSVDSALNKWVQQGKELSRQEITLALNHLRRRKMFGKALQVLDWLESNKKLEFTEKEYASKLDFIAKLRGLQNAEKYLEHVPNSFRGELLYRTLLANCASLENLRKTEETFNKMRELGFPVTSFACNQLLLIYKKVDKKKIADVLLMMEKENVKPSPFTYKILIDVKGLSNDIDGMSQIVETMKAEGVEPDHQTQASLARHYASAGLTEESEAILKEIEGENLKDNMWVCPTLLRIYAILGRADEVERIWKVCESKPQVENCLAAVEAWGRLKKIEEAEAVFEMMSNKWKLTSKNYSALLKIYTRHKMLDKGRDLIKKMGDSGCIIGPVTWDALVSLYVQAGEVEKADSVLQKALQQNKMKPLFTTYMTIMEQYAKRGDVHNAEKIFYRLRQANYISRITPFHALAQAYKNAKLPAYGIRERMKADNLFPNKALAGQLALVDPFRKTAVSDLLD* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g3917 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 474 509 IPR002885 -
Mal1g3917 601 Pfam PPR repeat 476 500 IPR002885 -
Mal1g3917 601 Pfam PPR repeat 443 471 IPR002885 -
Mal1g3917 601 Pfam PPR repeat 513 540 IPR002885 -
Mal1g3917 601 TIGRFAM PPR: pentatricopeptide repeat domain 476 507 IPR002885 -
Mal1g3917 601 TIGRFAM PPR: pentatricopeptide repeat domain 443 472 IPR002885 -
Mal1g3917 601 PANTHER DNA-BINDING PROTEIN 35 601 - -
Mal1g3917 601 SUPERFAMILY TPR-like 340 540 IPR011990 GO:0005515
Mal1g3917 601 Pfam Pentatricopeptide repeat domain 264 314 IPR002885 -
Mal1g3917 601 PANTHER OS12G0527900 PROTEIN 35 601 - -
Mal1g3917 601 MobiDBLite consensus disorder prediction 91 137 - -
Mal1g3917 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 439 473 IPR002885 -
Mal1g3917 601 Gene3D Tetratricopeptide repeat domain 143 288 IPR011990 GO:0005515
Mal1g3917 601 Gene3D Tetratricopeptide repeat domain 289 393 IPR011990 GO:0005515
Mal1g3917 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 303 337 IPR002885 -
Mal1g3917 601 Gene3D Tetratricopeptide repeat domain 401 595 IPR011990 GO:0005515
Mal1g3917 601 MobiDBLite consensus disorder prediction 91 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g3917 Mal-Chr1 79981413 79986042 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g3917 148 540 EF-hand Containing Proteins AT1G02150 24.324 4.46e-34 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g3917 - - mtr:MTR_1g050750 885.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g3917 1 79981413 79986042 Mal1g1895 1 24668321 24668719 ECH
Mal1g3917 1 79981413 79986042 Mal1g3917 1 79981413 79986042 ECH