Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1567 ATGAAGCTTGAACATTCCTTGTTTCTTGTGACTTTGGCTCTGCTCTTAGCCACCACTCTCTCATCAGATCCTGACTCTCTTCAAGACCTTTGTGTTGCTGACCTTGCCTCAGGTGTGACAGTGAACGGATTCACTTGCAAAGAGGCATCCAAGGTAAATGGCTCTGATTTCTCCTCCAACATACTAGCCAAACCAGGAAGCACCAACAACACATTTGGCTCAGTGGTGACTGGAGCCAATGTTCAGAAAGTCCCAGGACTCAACACTCTTGGTGTGTCTCTGTCAAGGATTGACTATGCACCCGGTGGCCTCAACCCACCACACACTCATCCTCGTGCCACCGAGGTGGTGTTTGTGCTTGAAGGGCAACTAGATGTTGGGTTCATAACCACAGCCAATGTGCTCATATCAAAGACAATTAACAAGGGTGAGATATTTGTGTTCCCAAAAGGCTTGGTTCACTTCCAAAAGAACAATGCAAATGTACCTGCTGCTGTTCTTTCTGCATTCAACAGCCAACTTCCTGGTACACAGTCCATTGCTACTACCTTGTTTGCAGCCACACCTTCTGTTCCAGACAATGTGTTGACCAAGACATTCCAAGTGGGTACCAAAGAGGTTGAGAAAATCAAGTCTAGGCTTGCACCCAAAAAGTAA 657 0.4658 MKLEHSLFLVTLALLLATTLSSDPDSLQDLCVADLASGVTVNGFTCKEASKVNGSDFSSNILAKPGSTNNTFGSVVTGANVQKVPGLNTLGVSLSRIDYAPGGLNPPHTHPRATEVVFVLEGQLDVGFITTANVLISKTINKGEIFVFPKGLVHFQKNNANVPAAVLSAFNSQLPGTQSIATTLFAATPSVPDNVLTKTFQVGTKEVEKIKSRLAPKK* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1567 218 Pfam Cupin 62 207 IPR006045 -
Mal1g1567 218 ProSitePatterns Germin family signature. 103 116 IPR019780 GO:0030145
Mal1g1567 218 PANTHER GERMIN-LIKE PROTEIN 12 216 - -
Mal1g1567 218 Gene3D Jelly Rolls 22 216 IPR014710 -
Mal1g1567 218 PRINTS Germin signature 108 128 IPR001929 GO:0030145
Mal1g1567 218 PRINTS Germin signature 171 186 IPR001929 GO:0030145
Mal1g1567 218 PRINTS Germin signature 138 158 IPR001929 GO:0030145
Mal1g1567 218 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 12 216 - -
Mal1g1567 218 SMART Cupin_1_3 59 208 IPR006045 -
Mal1g1567 218 SUPERFAMILY RmlC-like cupins 23 213 IPR011051 -
Mal1g1567 218 CDD cupin_OxOx 23 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1567 Mal-Chr1 20471728 20473298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1567 9 218 Miscellaneous Gene Families AT3G05930 55.924 1.74e-84 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1567 - - gmx:100791828 366.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g1567 1 20471728 20473298 Mal1g1567 1 20471728 20473298 ECH
Mal3g4795 3 127932445 127933784 Mal1g1567 1 20471728 20473298 PCT