Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3205 ATGGATTATCATTATATTCTGGGAGGGATTGTAGCTTCTAGTTTGGTTCTTTTGTTTGCTTTGCACGGTTTTGCTTTTGCAGCTAAGAAGAAGGCCACAAGTAAAATTCAGGAAGAAAGTAATGGTCGAATTATAAGGACATCAGAAAATGGAAAATGCTCAACAGAAGCTTCAGAAGATGTGGATATCGTTATTGTGGGTGCTGGTGTTGCTGGTGCAGCCCTTGCTTACACGCTTGGAAAGGATGGAAGGAGAGTGCATGTTATTGAAAGGGACCTAACTGAACCAGATAGGATTGTGGGTGAATTGCTACAACCTGGAGGTTATCTTAAGCTAATTGAGCTGGGTCTTGAAGATTGTGTGGATGAAATTGATGCTCAGAGAGTCTTTGGATATGCACTTTACAAGGATGGGAAGAATACCAAACTTTCCTATCCCTTGAAAAAATTTGACTCTGATATCTCTGGGAGAAGCTTTCACAATGGCCGTTTCATTCAGAGAATGCGAGAGAAGGCTTCATCTCTTCCAAATGTCAAGTTAGAACAAGGAACTGTCGCATCTCTACTTGAAGAAAATGGGACAATCAAAGGGGTGCTCTACAAAACCAAGAGTGGACAAGAGCTCACAGCAATGGCTCCTCTCACCATAGTATGTGATGGTTGTTTCTCCAACTTGAGACGTTCTCTTTGCAACCCAAAGGTTGATGTACCATCTCATTTTGTTGGTCTAGTTCTGGAAAACTGCAACCTTCCACATGCAAACCATGGCCATGTTGTCTTGGCTGATCCTTCTCCCATCTTGTTTTACCCCATTAGCAGCACTGAGATTCGGTGTTTGGTTGATGTGCCTGGCCAAAAATTACCATCCATTGGTAATGGTGACATGGCTCATTATTTGAAAACAATAGTAGCTCCTCAGGTTCCGCAAGAGCTGCAATCTGCATTTGTAGCAGCGGTTGATAAAGGAAGCATAAGAAGCATGCCAAACAGAAGCATGCCTGCATCTCCTCAGCCCACACCCGGTGCCCTTCTGATGGGAGACGCCTTCAACATGCGCCACCCGTTAACTGGAGGAGGAATGACTGTTGCTTTGTCTGACATTGTTTTGTTAAGGGATCTTCTTAGGCCTTTGCAGGATCTGCATTGTGCTTCTTCTCTTTGCAAATATCTGGAATCATTCTACACCCTTCGCAAGCCAGTGGCATCTACAATAAACACATTAGCTGGGGCATTATACAAGGTGTTTTGTGCTTCCCCTGATCCAGCTAGTAAGGAAATGAGGCAGGCATGTTTTGATTATTTGACACTTGGAGGTGTTTTCTCAGATGGACCAATAGCTCTTCTCTCTGGTCTAAATCCAAAGCCATTAAGCTTAGTTCTCCACTTCTTTGCCGTGGCTATTTATGGTGTTGGTCGTTTATTGGTACCATTTCCTTCTCCAAAACGCATGTGGATTGGAGCTAGATTGATTTCGGGTGCATCTGGTATTATATTTCCTATTATTAAGGCTGAAGGAATCAGACAAATGTTCTTCCCAGTAACTGTGCCTGCATATTACAGAGCACCTCCTGCCAAATTTGCATGA 1584 0.4331 MDYHYILGGIVASSLVLLFALHGFAFAAKKKATSKIQEESNGRIIRTSENGKCSTEASEDVDIVIVGAGVAGAALAYTLGKDGRRVHVIERDLTEPDRIVGELLQPGGYLKLIELGLEDCVDEIDAQRVFGYALYKDGKNTKLSYPLKKFDSDISGRSFHNGRFIQRMREKASSLPNVKLEQGTVASLLEENGTIKGVLYKTKSGQELTAMAPLTIVCDGCFSNLRRSLCNPKVDVPSHFVGLVLENCNLPHANHGHVVLADPSPILFYPISSTEIRCLVDVPGQKLPSIGNGDMAHYLKTIVAPQVPQELQSAFVAAVDKGSIRSMPNRSMPASPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVLLRDLLRPLQDLHCASSLCKYLESFYTLRKPVASTINTLAGALYKVFCASPDPASKEMRQACFDYLTLGGVFSDGPIALLSGLNPKPLSLVLHFFAVAIYGVGRLLVPFPSPKRMWIGARLISGASGIIFPIIKAEGIRQMFFPVTVPAYYRAPPAKFA* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3205 527 PANTHER SQUALENE MONOOXYGENASE-RELATED 1 525 - -
Lja6g3205 527 PANTHER SQUALENE MONOOXYGENASE 1 525 IPR040125 GO:0004506|GO:0016126
Lja6g3205 527 Pfam Squalene epoxidase 212 484 IPR013698 GO:0004506|GO:0016021|GO:0050660
Lja6g3205 527 Gene3D - 53 434 IPR036188 -
Lja6g3205 527 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 339 354 - -
Lja6g3205 527 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 62 84 - -
Lja6g3205 527 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 211 226 - -
Lja6g3205 527 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 354 370 - -
Lja6g3205 527 Pfam NAD(P)-binding Rossmann-like domain 65 91 - -
Lja6g3205 527 SUPERFAMILY FAD/NAD(P)-binding domain 60 436 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3205 Lja-Chr6 60469093 60473030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3205 20 524 Miscellaneous Gene Families AT1G58440 74.851 0.0 798
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3205 K00511 - gmx:100795027 879.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g3205 6 60469093 60473030 Lja6g3205 6 60469093 60473030 ECH
Lja4g3958 4 72575328 72579258 Lja6g3205 6 60469093 60473030 PCT