Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3958 ATGGATTATGAATTTATTCCAGGAGGGATACTGGCTTGTAGTTTGGCCTTAGTGTTTGGTCTGTACCAATTTGCAGAGAAGAGGAAGGCCACAAATCCAAGTTCAATGCATGTAAAGAGTAGTAATGGGTGTGCAAAGACAACATCAGAAAATGGAATATGCCCACAAAATGGTGAAGGAAGTACTGACATCATCATTGTTGGTGCTGGAGTTGCTGGCGCAGCCCTTGCTTACACACTTGGAGAGGATGGACGGCGAGTGCATGTGATTGAAAGGGACTTGAATGAACCTGACAGGATTGTTGGTGAAGTACTAATACCTGGGGGCTATCTCAAGTTAATTGAGTTGGGTCTGGAGGATTGTTTGGATGAAATTGATGCTCAGCAAATCTTTGGATATGCCTTTTATAAGGATGGGAAAGTTGCCAAGTTATCTTATCCTTTGGAAAAATTTGATTCTCATGTTTCTGGGAAAAGCTTTCACAATGGTCGTTTCATACAGAGAATGAGAAAAAAGGCTTTATCTCTACCAAATGTAAAATTGGAACAAGGAACTGTTACATCTCTAGTTGAAGAAAAAGGAACCATAAAAGGGGTGCACTACAAAACCAAGAGTGGACAAGAACTCATAGCAAAGGCTCCCCTCACCATAGTGTGTGATGGTTGTTTTTCCAACTTGAGGCGCTCTCTTTGCACCCCTAAGGTTGAAGTGCCCTCTCATTTTGTTGCACTAGTCTTGGAGAACTGTAATCTTCCATATGCAAATCATGGACACATTATCTTTGGTGATCCTTCAACAATTTTAAGTTATCCCATTAGTAGCACTGAGGTTCGCTGTTTTGTTGAATTGCATGGCCAAAAGTTACCTTCCATTGGTAATGGTGAAATGGCCCTTTATTTGAAAACTGTGGTAGCTTCCCAGGTTCCTCCTGAGTTGCATACTTCTTTTATAGCAGCAATTGATAAAGGAAATATGAGAACCATGCCCAGTAGATTCATGCCTGCCTCACCTCATCCCACACCTGGTGCCCTTTTGATCGGAGACGCGTTCAATATGCGTCACCCTTTAACCGGAGGAGGAATGACCGTGGCTTTGGCTGATATTGTTGTGTTGAGGAATCTACTTAGACCTCTGCATGATTTGCACAATGCTTCTGCTATTTGCAAATATCTTGAATCATTCTACACTCTCCGCAAGCCTATGGCATCTACGATAAACACATTAGCTACAGCATTGCCCAAGGTGTTTCGTGTATCTCCTGACCCTGCTATGAAGGAATTGCAACAGGCATTCCTTGATTATTTGAGCCTTGGAAGAGTTTTCTCAGAGGGACTAGCATCTCTCCTCTCTGGACTAAATCCTCGTCCATTGAGCGTGGTTCTCCATTTCTTCGCGGTGGCTATATATGGCGTTGGCCGACTTCTGAAACCATTTCCTTCTCCGAAACGAATATGGATTGGAGCTAGGTTGATTTCAGGTGCAGCTTGTATCCTTTTCCCCATTATCAAGGCTGAAGGATTAAGACAAATGTTTTTCCCAGCAACTGTTCCAGCATATTACAGAATGCCTCCTGTCCATTAA 1581 0.4276 MDYEFIPGGILACSLALVFGLYQFAEKRKATNPSSMHVKSSNGCAKTTSENGICPQNGEGSTDIIIVGAGVAGAALAYTLGEDGRRVHVIERDLNEPDRIVGEVLIPGGYLKLIELGLEDCLDEIDAQQIFGYAFYKDGKVAKLSYPLEKFDSHVSGKSFHNGRFIQRMRKKALSLPNVKLEQGTVTSLVEEKGTIKGVHYKTKSGQELIAKAPLTIVCDGCFSNLRRSLCTPKVEVPSHFVALVLENCNLPYANHGHIIFGDPSTILSYPISSTEVRCFVELHGQKLPSIGNGEMALYLKTVVASQVPPELHTSFIAAIDKGNMRTMPSRFMPASPHPTPGALLIGDAFNMRHPLTGGGMTVALADIVVLRNLLRPLHDLHNASAICKYLESFYTLRKPMASTINTLATALPKVFRVSPDPAMKELQQAFLDYLSLGRVFSEGLASLLSGLNPRPLSVVLHFFAVAIYGVGRLLKPFPSPKRIWIGARLISGAACILFPIIKAEGLRQMFFPATVPAYYRMPPVH* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3958 526 SUPERFAMILY FAD/NAD(P)-binding domain 62 435 IPR036188 -
Lja4g3958 526 PANTHER SQUALENE MONOOXYGENASE 1 526 IPR040125 GO:0004506|GO:0016126
Lja4g3958 526 PANTHER SQUALENE MONOOXYGENASE-RELATED 1 526 - -
Lja4g3958 526 Gene3D - 55 447 IPR036188 -
Lja4g3958 526 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 355 371 - -
Lja4g3958 526 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 212 227 - -
Lja4g3958 526 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 63 85 - -
Lja4g3958 526 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 340 355 - -
Lja4g3958 526 Pfam NAD(P)-binding Rossmann-like domain 66 92 - -
Lja4g3958 526 Pfam Squalene epoxidase 212 485 IPR013698 GO:0004506|GO:0016021|GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3958 Lja-Chr4 72575328 72579258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3958 45 524 Miscellaneous Gene Families AT1G58440 72.292 0.0 722
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3958 K00511 - gmx:100800329 837.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3958 4 72575328 72579258 Lja4g3958 4 72575328 72579258 ECH
Lja4g3958 4 72575328 72579258 Lja6g3205 6 60469093 60473030 PCT