Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3201 ATGGGGGAGCATTTTGAGTGCTGTGAAACCAAGTTCTTTATACGCATACTGACAGTAGCACTGCTTGTGATATTCGCTGGATTGATGTCAGGCCTTACCTTAGGCCTCATGTCATTGAGTCTTGTTGATCTTGAGGTCCTTGCTAAGTCTGGTACCCCTTTAGATCGCAAGCATGCTGCGAAGATATTGCCTGTTGTGAGAAATCAACACCTATTGCTTTGTACCCTTCTAATTTGCAATGCTGCACTTCCAATATTTCTTGATAGTCTTATTGATGCATTTGGAGCTGTCCTTATTTCTGTGACATTGATTCTTTTGTTTGGTGAGATTATACCCCAATCAATTTGTTCAAGATATGGTTTAGCAATTGGTGCAGCAGTGGCTCCAGTTGTCCGTGTTCTTATGTGGATATGTTTTCCTGTTGCCTATCCTATCAGCAAGCTGTTGGACGTTGTGCTAGGGCATCGTCGTCGAGCTCTCTTTCGCAGAGCTGAGTTGAAAACACTTGTAAATTTGCATGGTAACAAGGCTGGGAAAGGTGGGGAACTGTCACATCATGAAACAACAATCATTTCTGGGGCACTTGAACTCTCTGAGAAGACAGCCAGTGATGCCATGACCCCTTTAGCTGGAACATTTTCTATTGATATTAATTCAATTTTTGATAGGAATCTGATGAATCTAATATTGGAGGAAGGGCACAGCAGAGTCCCTGTCTATTATGAGGATTCTACAAATATTATTGGACTTATCCTGGTCAAGAATTTATTGACAATTGACCCAGAAGATGAAACACCAGTGAAAAATGTGACCATACGCAAAATACCAAGGGTACCAGAAATGATGCCACTGTATGATATTTTGAATGAGTTCCAAAAGGGCCATAGCCACATGGCCATTGTTGTTAGACATTGTGACAAGACAGGGCAGCAATCTTCCAATGACATTGTAAGAGATGTGAGGGTGGATATTGATAGGGAGAAGCCTTCCCAAGAGAGAATGTTGAGAATTAGGAGACAACTCCATGCGAGGAAAAGCTATAGATATGCAAGTAATTCGTATAGGAGTGGTTCTAGGAGCAAAAAATGGTCAGAGAATATGTACTCAGACATTGTGGAATTAGATGAAAATTCACTTCCAAAGCTTCCCCCAAAAGAAGAAGAAGCTGTTGGAATAATTACAATGGAAGATGTCATTGAACAGCTTTTGCAGGAGGAGATCTTTGATGAGACAGATCATCATTTTGAAGACTCTTAA 1257 0.4089 MGEHFECCETKFFIRILTVALLVIFAGLMSGLTLGLMSLSLVDLEVLAKSGTPLDRKHAAKILPVVRNQHLLLCTLLICNAALPIFLDSLIDAFGAVLISVTLILLFGEIIPQSICSRYGLAIGAAVAPVVRVLMWICFPVAYPISKLLDVVLGHRRRALFRRAELKTLVNLHGNKAGKGGELSHHETTIISGALELSEKTASDAMTPLAGTFSIDINSIFDRNLMNLILEEGHSRVPVYYEDSTNIIGLILVKNLLTIDPEDETPVKNVTIRKIPRVPEMMPLYDILNEFQKGHSHMAIVVRHCDKTGQQSSNDIVRDVRVDIDREKPSQERMLRIRRQLHARKSYRYASNSYRSGSRSKKWSENMYSDIVELDENSLPKLPPKEEEAVGIITMEDVIEQLLQEEIFDETDHHFEDS* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3201 418 PANTHER ANCIENT CONSERVED DOMAIN PROTEIN-RELATED 1 418 IPR045095 GO:0010960
Lja6g3201 418 SUPERFAMILY CBS-domain pair 191 404 IPR046342 -
Lja6g3201 418 PANTHER AND COBALT EFFLUX PROTEIN CORC, PUTATIVE-RELATED 1 418 - -
Lja6g3201 418 CDD CBS_pair_CorC_HlyC_assoc 201 302 IPR044751 -
Lja6g3201 418 ProSiteProfiles CNNM transmembrane domain profile. 8 187 IPR002550 -
Lja6g3201 418 Pfam Cyclin M transmembrane N-terminal domain 19 181 IPR002550 -
Lja6g3201 418 Gene3D - 187 320 IPR046342 -
Lja6g3201 418 Gene3D - 362 410 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3201 Lja-Chr6 60426813 60429638 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3201 K16302 - gmx:100795897 645.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g3201 6 60426813 60429638 Lja6g3201 6 60426813 60429638 ECH
Lja4g3953 4 72539887 72543984 Lja6g3201 6 60426813 60429638 PCT