Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3953 ATGGCGGTGGAGTACACATGCTGCGAATCGCAGTTCTTCGTGCACATCCTCGTCATCGTCTTTCTCGTGCTCTTCGCAGGTTTGATGTCTGGTCTCACCTTAGGCCTCATGTCCTTGAGTCTCGTTGATCTTGAGGTTCTTGCCAAGTCTGGTACTCCTCAAGATCGTAAACACGCTGAGAAGATATTGCCTGTTGTGAAAAACCAGCATTTGTTGCTGTGTACCCTGCTAATCTGCAATGCTGCAGCCATGGAGGCACTTCCTATTTTTCTTGATAGTCTTGTTACGGCCTGGGGTGCTATACTGATTTCGGTGACATTAATTCTTCTGTTCGGTGAGATTATACCCCAGTCAATCTGTTCTCGATATGGTTTAGCTATTGGTGCATTGGTGGCTCCCTTTGTCCGTGTGCTTGTGTGGATATGTTATCCAATTGCTTTTCCGATTAGCAAGTTGCTGGACTTTTTGCTTGGTCATCGACATGAAGCCCTTTTCCGCAGAGCTGAGTTGAAAACACTTGTAAATATGCATGGTAATGAGGCTGGGAAAGGTGGGGAACTGACTCATGATGAAACAACAATAATTGCTGGGGCACTTGAACTCAGTGACAAGACAGCAAGTGATGCCATGAGTCCTATATGTGAAACATTTGCCATTGATATTAATTCAAAGCTGGATAGGGAACTGATGAATGAAATATTGGAGAACGGGCATAGCAGAGTTCCGGTCTTTTATGAGCAGCCTACAAACATTATTGGGCTTATACTGGTCAAGAATTTATTGACAATTCATCCTGAGGATGAAGTACCTGTGAAGAGTGTAACCATACGCAGGATTCCAAGAATTACATATATGGACAGGGTTCCAGAAAGCATGCCACTTTATGATATTTTGAATGAGTTCCAGAAGGGCCACAGCCACATGGCTGTTGTTGTAAGACGATGCGACAAGAACCAGCAGCAATCTTCAGAAAACTATGCAAATGGTTCGGAGAGATATGTGACGGTGGATATTGATGGTGAAAAGCCTTCTCAGGAAAAAGTTTTGAAACCCACGATGCCACTCCACAAGTGGAAAAGCTTTCCTAATACAAACAAGTCAAATAGGGGTGGTTCTAGGAGCAAAAAATGGTCAAAAAATATGTACTCAGATATTTTGGAGATTGATGGAAATCCCCTTCCACATATGCCTGAAGAAGAAGAAGCTGTTGGAATAATTACGATGGAAGATGTCATTGAGGAGCTTTTACAGGAGGAGATCTTTGATGAGACAGATCATCATTTTGAAGACTCATGA 1296 0.4298 MAVEYTCCESQFFVHILVIVFLVLFAGLMSGLTLGLMSLSLVDLEVLAKSGTPQDRKHAEKILPVVKNQHLLLCTLLICNAAAMEALPIFLDSLVTAWGAILISVTLILLFGEIIPQSICSRYGLAIGALVAPFVRVLVWICYPIAFPISKLLDFLLGHRHEALFRRAELKTLVNMHGNEAGKGGELTHDETTIIAGALELSDKTASDAMSPICETFAIDINSKLDRELMNEILENGHSRVPVFYEQPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRITYMDRVPESMPLYDILNEFQKGHSHMAVVVRRCDKNQQQSSENYANGSERYVTVDIDGEKPSQEKVLKPTMPLHKWKSFPNTNKSNRGGSRSKKWSKNMYSDILEIDGNPLPHMPEEEEAVGIITMEDVIEELLQEEIFDETDHHFEDS* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3953 431 Pfam Cyclin M transmembrane N-terminal domain 17 190 IPR002550 -
Lja4g3953 431 PANTHER AND COBALT EFFLUX PROTEIN CORC, PUTATIVE-RELATED 1 431 - -
Lja4g3953 431 SUPERFAMILY CBS-domain pair 194 417 IPR046342 -
Lja4g3953 431 Gene3D - 385 423 IPR046342 -
Lja4g3953 431 Gene3D - 191 336 IPR046342 -
Lja4g3953 431 PANTHER ANCIENT CONSERVED DOMAIN PROTEIN-RELATED 1 431 IPR045095 GO:0010960
Lja4g3953 431 ProSiteProfiles CNNM transmembrane domain profile. 8 191 IPR002550 -
Lja4g3953 431 CDD CBS_pair_CorC_HlyC_assoc 205 312 IPR044751 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3953 Lja-Chr4 72539887 72543984 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3953 K16302 - gmx:100801937 732.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3953 4 72539887 72543984 Lja4g3953 4 72539887 72543984 ECH
Lja4g3953 4 72539887 72543984 Lja6g3201 6 60426813 60429638 PCT