Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2834 ATGTCTCTCCCCACCAAACGTTCTGCTTCTGCTTCTTCTTCACCCACCACCGCCGCCGCCGCTCCTATGAAAAAGCAAAAGCCCCTTTCCTCCCACTCCGACTCCGACTCCGCCGCCGCCGCACTCATGCCCCTCGACGACGATCTCAAACCCTCCAACGCCGTTGGTCTCATGGCCGCCAATCTCGCCCGCAAGAAAGCTACCCCTCCTCAACCCCCCAAAAAACTCCTCATCAAGCTCCACAAAGCTAAACCAACATTGCCGACGAATTTCGAGGAGGATACATGGGCAAAGCTGAAGTCAGCTATTTGTGCAATATTTTTGAAGCAGCCGGACTCTTGTGACTTGGAGAAGCTTTATCAGGCTGTGAGTGATCTCTGCCTTTATAAAATGGGTGGAAATCTTTATCAACGGATTGAAAAGGAGTGTGAAGTGCACATATCTGCAGCGCTGCAGTCTTTGGTCGGACAAAGCCCCGATTTGGTTGTTTTTCTATCTCTAGTTGAGAGATGTTGGCAGGACCTTTGTGATCAAATGTTGATGATTCGTGGTATAGCCTTGTATCTGGACAGGACGTACGTGAAGCAAACAGCAAATGTTCGGTCATTATGGGACATGGGCTTACAACTTTTCCGTAAACATCTTTCGTTGTCTCCTGAAGTGCAGCACAAAACTGTTACTGGTCTTCTAAGAATGATTGAAAGTGAAAGATTAGGTGAAGCTGTGGATAGAACTCTTCTAAACCATCTTTTGAAGATGTTTACTGCTCTAGGAATTTATGCAGAAAGCTTTGAGAAGCCATTCCTTGAATGCACATCTGAATTTTATGCTGCGGAAGGTATGAAATACATGCAGCAATCAGATGTTCCAGATTACTTGAAGCATGTGGAGACTAGGTTGCAAGAGGAACATGATAGATGTTTGATCTACTTGGATGCAAGTACTAGGAAGCCATTGATAGCAACAGCAGAAAAACAACTTCTTGAACGTCATATACCTGCCATTCTTGATAAGGGTTTCTCTATGCTTATGGATGGGAATCGCATTGAAGACCTTCAGAGAATTTACTCACTCTTTTCAAGGGTCAATGCCCTTGAGTCACTGAGGCAGGCCATTAGTTCATACATCAGGAAAACTGGGCAGGGCGTTGTTATGGATGATGAGAAAGATAAAGATATGGTTTCTTCCCTTCTGGAATTTAAGGCTTCTCTTGACACGATATGGGAAGAAAGCTTTTTCAAGAATGAAGCTTTCTGTAACACCATTAAAGATGCATTTGAGCATCTTATCAATCTCCGGCAGAACCGACCTGCGGAGTTGATTGCCAAGTTTTTGGATGAGAAGCTTCGTGCGGGTAATAAGGGAACTTCAGAAGAGGAATTAGAGGGCACACTTGATAAAGTTCTGGTGTTATTCAGGTTCATTCAGGGCAAGGATGTGTTTGAGGCATTTTATAAGAAAGATCTTGCTAAAAGACTGCTGCTAGGAAAGAGTGCTTCTATTGACGCGGAGAAATCTATGATCTCCAAGTTGAAGACCGAGTGTGGCAGCCAGTTCACAAACAAACTGGAAGGAATGTTTAAGGACATTGAATTATCAAAAGAAATAAATGAGTCCTTCAAACAGTCCTCCCAGGCGAGAACAAAACTTCCATCAGGGATTGAAATGAGTGTTCATGTCTTGACAACTGGGTACTGGCCAACATATCCACCCATGGATGTTAGACTTCCTCATGAATTGAACGTTTACCAGGATATTTTTAAAGAGTTCTATCTAAGCAAATACAGTGGAAGGCGTCTAATGTGGCAAAATTCGTTAGGTCACTGTGTCCTGAAGGCAGATTTTCCCAAAGGGAAAAAGGAGTTGGCTGTCTCCCTGTTTCAGACTGTTGTTCTGATGCTATTCAATGATGCCGAGAAACTTAGCTTTCAAGATATCAAGGACTCTACTAGTATTGAGGACAAGGAACTGAGAAGAACTCTGCAATCACTTGCCTGTGGAAAAGTTCGTGTTCTTCAAAAGACGCCAAAGGGTAGAGATGTGGAGGATGATGATTCATTTGATTTTAATGACGGGTTTACTGCTCCTCTTTACCGGATAAAGGTGAATGCAATTCAGTTGAAGGAGACCGTGGAGGAAAATACAAGCACCACTGAGAGAGTTTTCCAAGACCGTCAATATCAGGTTGATGCTGCTATTGTGAGGATAATGAAGACTAGGAAAGTGCTTAGTCACACACTTCTTATTACTGAACTCTTCCAACAGCTCAAGTTCCCAATAAAACCAGCTGATTTGAAAAAAAGGATTGAAAGCCTGATTGACAGAGAGTACCTGGAGAGGGACAAGAACAACCCTCAAATATACAATTACCTGGCATAG 2379 0.4334 MSLPTKRSASASSSPTTAAAAPMKKQKPLSSHSDSDSAAAALMPLDDDLKPSNAVGLMAANLARKKATPPQPPKKLLIKLHKAKPTLPTNFEEDTWAKLKSAICAIFLKQPDSCDLEKLYQAVSDLCLYKMGGNLYQRIEKECEVHISAALQSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTANVRSLWDMGLQLFRKHLSLSPEVQHKTVTGLLRMIESERLGEAVDRTLLNHLLKMFTALGIYAESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVETRLQEEHDRCLIYLDASTRKPLIATAEKQLLERHIPAILDKGFSMLMDGNRIEDLQRIYSLFSRVNALESLRQAISSYIRKTGQGVVMDDEKDKDMVSSLLEFKASLDTIWEESFFKNEAFCNTIKDAFEHLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKADFPKGKKELAVSLFQTVVLMLFNDAEKLSFQDIKDSTSIEDKELRRTLQSLACGKVRVLQKTPKGRDVEDDDSFDFNDGFTAPLYRIKVNAIQLKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA* 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2834 792 MobiDBLite consensus disorder prediction 1 20 - -
Lja6g2834 792 Gene3D Cullin Repeats 333 434 - -
Lja6g2834 792 ProSiteProfiles Cullin family profile. 436 665 IPR016158 -
Lja6g2834 792 SUPERFAMILY Cullin homology domain 433 703 IPR036317 -
Lja6g2834 792 Gene3D Cullin Repeats 217 331 - -
Lja6g2834 792 Gene3D Cullin Repeats 435 546 - -
Lja6g2834 792 PANTHER CULLIN 54 792 IPR045093 -
Lja6g2834 792 Pfam Cullin protein neddylation domain 724 784 IPR019559 -
Lja6g2834 792 SUPERFAMILY Cullin repeat-like 90 432 IPR016159 -
Lja6g2834 792 Gene3D Cullin; Chain C, Domain 2 551 706 - -
Lja6g2834 792 SMART cul_2 466 615 IPR016158 -
Lja6g2834 792 PANTHER CULLIN-4A 54 792 - -
Lja6g2834 792 SUPERFAMILY "Winged helix" DNA-binding domain 704 792 IPR036390 -
Lja6g2834 792 ProSitePatterns Cullin family signature. 765 792 IPR016157 GO:0006511|GO:0031461|GO:0031625
Lja6g2834 792 Gene3D Cullin Repeats 83 214 - -
Lja6g2834 792 SMART Cullin_Nedd8_2 721 786 IPR019559 -
Lja6g2834 792 Pfam Cullin family 96 693 IPR001373 GO:0006511|GO:0031625
Lja6g2834 792 Gene3D - 719 792 IPR036388 -
Lja6g2834 792 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2834 Lja-Chr6 57555512 57563109 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2834 K10609 - gmx:100805491 1393.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2834 6 57555512 57563109 Lja6g2834 6 57555512 57563109 ECH
Lja6g2834 6 57555512 57563109 Lja4g1263 4 11167954 11170590 PCT