Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2786 ATGGATGTGAATATGGAGAATTCAGGAGCTGAAAGTAATGGTTCTCATGCAAAGAATCAGGCATTAAGGGATGTTGCGGTTAAAGAAACATTTGACAAATTGGTTGAAGAAGAAAGGAAGAAGATGGTCCCACTGAAGGAAACAACTCCTCCACCAATCCTTGAAGCTGCAATTAAGAATGGAAATGTCCGGGCACCAACTCATATTACTTCCACCATTTGTGATGAAAGAGGTGAGGTGCCATTATATGCTGGTGTACCCTTGTCTTCCATTATTGAAAAGGGTTATGGCATTGGTGATGTTATCTCTCTTCTCTGGTTCAAACGCAGCCTTCCCCGTTACTGTACTCAATTTATTGAGATGTGCATCATGTTATGTGCCGACCATGGTCCTTGCGCCTCTGGTGCTCACAATACTATTGTGACAGCAAGGGCTGGGAAGGACCTGATTTCTAGTCTAGTATCAGGTTTGCTTACAATTGGTCCTCGATTTGGCGGTGCCATTGATGATGCAGCTCGCTACTTCAAGGATGCTCATGACAGGGGGCTTACGCCTGATGAGTTTGTTGAAAGCATGAAGAAGAAAGGAATTCGCGTGCCAGGAATAGGGCACAGGGTCAAGAATAAGGACAAGAAAGATAAGAGAGTTGAGATGCTACAGAAGTTTGCACGGGCGCATTTTCCTTGTGTGAAATACATGGAATATGCTGTTCAAGTTGAAGATTACACCCTCTCAAAGTCAAATAAATTAATTCTCAATATTGATGGTGCCATTGCATCTCTTTTCTTGGATCTTCTGGCTGGTTGTGGAATGTTCACAGAGCAAGAGATCAGTGAAATTGTGGAGATTGGCTATCTGAATGGGCTCTTTGTGCTGGCACGCTCCATTGGTCTGATTGGCCATGCCTTTGACCAAAAGAGATTGAAGCAACCCCTCTACCGCCACCCATGGGAGGATGTTCTCTACACAAATTGA 975 0.44 MDVNMENSGAESNGSHAKNQALRDVAVKETFDKLVEEERKKMVPLKETTPPPILEAAIKNGNVRAPTHITSTICDERGEVPLYAGVPLSSIIEKGYGIGDVISLLWFKRSLPRYCTQFIEMCIMLCADHGPCASGAHNTIVTARAGKDLISSLVSGLLTIGPRFGGAIDDAARYFKDAHDRGLTPDEFVESMKKKGIRVPGIGHRVKNKDKKDKRVEMLQKFARAHFPCVKYMEYAVQVEDYTLSKSNKLILNIDGAIASLFLDLLAGCGMFTEQEISEIVEIGYLNGLFVLARSIGLIGHAFDQKRLKQPLYRHPWEDVLYTN* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2786 324 MobiDBLite consensus disorder prediction 1 19 - -
Lja6g2786 324 CDD CCL_ACL-C 85 322 - -
Lja6g2786 324 PANTHER ATP-CITRATE SYNTHASE 8 323 - -
Lja6g2786 324 MobiDBLite consensus disorder prediction 1 21 - -
Lja6g2786 324 Pfam Citrate synthase, C-terminal domain 114 314 IPR002020 GO:0046912
Lja6g2786 324 SUPERFAMILY Citrate synthase 60 321 IPR036969 GO:0046912
Lja6g2786 324 Gene3D - 167 272 IPR016143 -
Lja6g2786 324 Gene3D Citrate Synthase, domain 1 116 314 IPR016142 -
Lja6g2786 324 PANTHER ATP-CITRATE SYNTHASE BETA CHAIN PROTEIN 1 8 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2786 Lja-Chr6 56948530 56951048 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2786 8 323 Acyl Lipid Metabolism Gene Families AT3G06650 78.313 0.0 535
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2786 K01648 - gmx:100800904 519.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2786 6 56948530 56951048 Lja6g2786 6 56948530 56951048 ECH
Lja4g1362 4 12201319 12206231 Lja6g2786 6 56948530 56951048 PCT