Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1362 ATGGCGACTGGACAACTATTCTCCCGTACGACACAAGCTTTGTTTTATAACTACAAGCAACTCCCCATCCAGCGGATGCTTGATTTTGACTTCCTTTGCGGTAGGGAAACACCATCAGTTGCTGGCATAATTAATCCTGGTTCCGAGGGATTTCAAAAGCTCTTTTTTGGACAGGAAGAAATTGCCATCCCAGTTCATTCTACCATTGAAGCAGCTTGTGCTGCCCATCCTACAGCTGATGTGTTCATCAATTTTGCATCATATAGAAGTGCTGCAGCGTCATCCAAGGATGCCTTGAAGCAGCCAACAATTAGAGTTGTTGCTATTATTGCTGAAGGTGTACCAGAGTCAGACGCCAAGCAATTGATTGCATATGCTCGGGCAAACAATAAGGTTGTTATTGGCCCAGCCACTGTTGGTGGTATTCAAGCTGGTGCTTTTAAGATAGGTGACACAGCGGGAACTATAGACAATATAATTCATTGCAAACTCTACAGGCCTGGATCTGTTGGGTTTGTTTCTAAATCGGGTGGTATGTCCAATGAGCTATACAACACTATTGGCCGTGTAACTGATGGAATTTATGAAGGCATTGCCATTGGAGGAGATGTTTTTCCTGGTTCCACACTGTCTGACCATGTTTTGCGGTTTAACAACATATCACAGGTTAAAATGATTGTGGTACTTGGTGAACTTGGTGGGCGGGATGAGTATTCTCTAGTGGAAGCCCTGAAACAAGGGAAAGTGACGAAACCTGTTGTTGCCTGGGTTAGTGGCACCTGTGCACGACTCTTCAAATCTGAAGTACAATTTGGTCATGCTGGAGCTAAAAGTGGTGGTGAGATGGAATCTGCTCAAGGAAAGAATCAAGCACTAAGAGAAGCTGGTGCTGTTGTTCCCACTTCATATGAAGCTTTTGAAGCTTCAATAAAGGAAACATTTGACAAATTGGTTGAAGAAGGGAAGATCCCACAAGTGAAGGAGTTTACTCCTCCACCAATCCCTGAGGACCTTAACACTGCAATTAAGAGTGGAAAAGTCCGTGCTCCAACTCATATTATTTCCACCATCAGTGATGACAGAGGTGAGGAGCCATGCTATGCTGGTGTACCTATGTCTTCCATTATTGAGAGGGGTTATGGTGTTGGTGATGTTATCTCTCTTTTGTGGTTCAAACGCAGCCTTCCTCGTTACTGTACTCAATTTATTGAGATATGCATCATGCTGTGTGCCGACCACGGTCCTTGTGTCTCTGGTGCTCACAACACTATAGTGACAGCAAGGGCTGGGAAGGACCTTGTCTCCAGTCTTGTATCTGGTTTGCTTACAATTGGTCCTCGATTTGGGGGTGCCATTGATGATGCTGCTCGCTATTTCAAGGATGCTTGTGACAGGAGTCTTACACCTTATGAATTTGTTGAAGGCATGAAGAAGAAAGGCATTCGTGTGGCAGGAATAGGGCACAGAATCAAGAATAGGGATAACAAAGATAAGAGAGTTGAGCTGCTACAGAAGTTTGCACGCACACATTTTCCTTCTGTGAGATACATGGAATATGCTGTTGAAGTTGAAAGCTACACACTCACAAAGGCAAACAACCTAGTTCTAAACGTAGATGGTGCAATTGGATCACTTTTCTTGGATCTTCTTGCTGGTAGTGGAATGTTCACCAAACAAGAGATTGATGAAATAGTCGGTATTGGCTATCTAAATGGGCTTTTTGTTCTGGCACGCTCCATTGGTCTGATTGGGCATACCTTTGATCAAAAGAGATTGAAACAACCACTCTATCGCCACCCATGGGAGGATGTTCTTTACACAAAGTGA 1827 0.439 MATGQLFSRTTQALFYNYKQLPIQRMLDFDFLCGRETPSVAGIINPGSEGFQKLFFGQEEIAIPVHSTIEAACAAHPTADVFINFASYRSAAASSKDALKQPTIRVVAIIAEGVPESDAKQLIAYARANNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIGRVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNISQVKMIVVLGELGGRDEYSLVEALKQGKVTKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQGKNQALREAGAVVPTSYEAFEASIKETFDKLVEEGKIPQVKEFTPPPIPEDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIIERGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDACDRSLTPYEFVEGMKKKGIRVAGIGHRIKNRDNKDKRVELLQKFARTHFPSVRYMEYAVEVESYTLTKANNLVLNVDGAIGSLFLDLLAGSGMFTKQEIDEIVGIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYTK* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1362 608 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 174 203 IPR033847 -
Lja4g1362 608 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 8 136 IPR036291 -
Lja4g1362 608 Pfam CoA-ligase 174 298 IPR005811 GO:0003824
Lja4g1362 608 PANTHER ATP-CITRATE SYNTHASE 1 608 - -
Lja4g1362 608 Gene3D - 2 137 - -
Lja4g1362 608 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 259 275 IPR017440 -
Lja4g1362 608 SUPERFAMILY Citrate synthase 134 606 IPR036969 GO:0046912
Lja4g1362 608 CDD CCL_ACL-C 369 606 - -
Lja4g1362 608 Pfam Citrate synthase, C-terminal domain 399 598 IPR002020 GO:0046912
Lja4g1362 608 Gene3D - 450 547 IPR016143 -
Lja4g1362 608 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 3. 168 193 IPR017866 -
Lja4g1362 608 PANTHER ATP-CITRATE SYNTHASE BETA CHAIN PROTEIN 2-LIKE 1 608 - -
Lja4g1362 608 Gene3D - 138 323 IPR016102 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1362 Lja-Chr4 12201319 12206231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1362 1 608 Acyl Lipid Metabolism Gene Families AT3G06650 92.105 0.0 1135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1362 K01648 - gmx:100795745 1159.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1362 4 12201319 12206231 Lja4g1362 4 12201319 12206231 ECH
Lja4g1362 4 12201319 12206231 Lja6g2786 6 56948530 56951048 PCT