Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2563 ATGGTGCGGTGCTTCGACGGATTGAAGCAGTGGTTTGCTGCTGCGTTAAGTTGTTTTCATGCTCGTGGTTTGCCCCCGCAACCTGCAAGAGGTTTACGGAATCCGGAAGCACTTGCAAGAGAAACAATATTTAGTGTTAGTGAAATTGAAGCTCTCTATGAGCTCTACAAGAAGATTAGCAGTTCAATGATTGATGATGGACTCATCCATAAGGAAGAATTTCAGATGGCCTTATACAAGACAGACAACAAAGACAGCATATTTGCAGATAGGGTGTTTGACTTGTTTGACGCAGAGCACCATGGGAAACTTAATTTCAGAGCGTTTGTGCGTGCTCTCTCTGTCTTTCATCCCAATGCACCATTAAAACAAATGGTGGTGGCCACTCTAGCTGAATCTGGGATGAAACTTGCAGATGATGTGGTTGATGGCATCATTGACAAGACATTCAAAGAAGTTGATACTAAGCTTGATGGGAAGATTGACTTGGAAGAATGGAAAGAACTTGTCGTGACGCATCCATCTCTTCTGAAAAATATGACCCTTCCCTATCTTAAGGAAATCACAACCACATTTCCTAGTTTTATCTTTCACTCACAGGTTGAAGATGATTAA 615 0.4195 MVRCFDGLKQWFAAALSCFHARGLPPQPARGLRNPEALARETIFSVSEIEALYELYKKISSSMIDDGLIHKEEFQMALYKTDNKDSIFADRVFDLFDAEHHGKLNFRAFVRALSVFHPNAPLKQMVVATLAESGMKLADDVVDGIIDKTFKEVDTKLDGKIDLEEWKELVVTHPSLLKNMTLPYLKEITTTFPSFIFHSQVEDD* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2563 204 PANTHER CALCINEURIN B-LIKE PROTEIN 3 ISOFORM X2 1 123 - -
Lja6g2563 204 Pfam EF hand 146 170 IPR002048 GO:0005509
Lja6g2563 204 SUPERFAMILY EF-hand 35 196 IPR011992 -
Lja6g2563 204 PANTHER CALCINEURIN B-LIKE PROTEIN 3 ISOFORM X2 122 203 - -
Lja6g2563 204 ProSiteProfiles EF-hand calcium-binding domain profile. 84 119 IPR002048 GO:0005509
Lja6g2563 204 Gene3D - 34 122 - -
Lja6g2563 204 Gene3D - 123 204 - -
Lja6g2563 204 ProSiteProfiles EF-hand calcium-binding domain profile. 141 176 IPR002048 GO:0005509
Lja6g2563 204 PANTHER CALCINEURIN B 122 203 IPR045198 GO:0005509|GO:0019722|GO:0019900
Lja6g2563 204 PANTHER CALCINEURIN B 1 123 IPR045198 GO:0005509|GO:0019722|GO:0019900
Lja6g2563 204 SMART efh_1 145 173 IPR002048 GO:0005509
Lja6g2563 204 SMART efh_1 88 116 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2563 Lja-Chr6 54399543 54401553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2563 1 203 EF-hand Containing Proteins AT5G55990 62.555 8.79e-95 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2563 K06268 - pvy:116105058 284.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2563 6 54399543 54401553 Lja6g2563 6 54399543 54401553 ECH
Lja4g4363 4 77195210 77198156 Lja6g2563 6 54399543 54401553 PCT