Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4363 ATGGTGCAGTGCTTAGACGGATTAAAGCATTTATGCGGTGCTCTGGTAAATTGTTTTGATGCCGATTCGTCAAGGCAACGGCAACCTAGAGGTTTACAAGATCCACAACTCCTTGCAAGAGAGACAGTGTTTAGTGTAAGTGAGATTGAGGCGCTTTATGAATTGTTCAAGAACATCAGCAGTGCAGTCATTGATGATGGACTAATTAATAAGGAAGAATTTCAGTTGGCTTTGTTCAAAACAAACAAGAAAGAGAGCTTATTTGCAGATAGGGTGTTCGACTTGTTTGACACAAAGCATAATGGGATACTTGATTTTGAAGAGTTTGCACGTGCTCTCTCTGTCTTTCATCCCAATGCACCAATTGATGATAAGATTCACTTTTCATTCCAATTGTATGATCTCAAACAGCAAGGGTTTATTCAAAGACAGGAGGTGAAACAAATGGTAGTCGCCACTCTAGCTGAATCTGGTATGAATCTTTCGGATGATGTGATCGAAAGTATTATTGACAAGATTGACAAGGAAGAATGGCGAAACCTTGTCTTACGACATCCATCCCTTCTGAAAAATATGACTTTACAGTATCTGAAAGATATCACCACCACATTTCCCAGTTTTGTGTTTCACTCACAAGTTGATGATACTTGA 651 0.3917 MVQCLDGLKHLCGALVNCFDADSSRQRQPRGLQDPQLLARETVFSVSEIEALYELFKNISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILDFEEFARALSVFHPNAPIDDKIHFSFQLYDLKQQGFIQRQEVKQMVVATLAESGMNLSDDVIESIIDKIDKEEWRNLVLRHPSLLKNMTLQYLKDITTTFPSFVFHSQVDDT* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4363 216 PRINTS Recoverin family signature 92 113 - -
Lja4g4363 216 PRINTS Recoverin family signature 139 157 - -
Lja4g4363 216 ProSiteProfiles EF-hand calcium-binding domain profile. 84 119 IPR002048 GO:0005509
Lja4g4363 216 Pfam EF hand 90 111 IPR002048 GO:0005509
Lja4g4363 216 SUPERFAMILY EF-hand 35 208 IPR011992 -
Lja4g4363 216 Gene3D - 34 216 - -
Lja4g4363 216 PANTHER CALCINEURIN B 1 216 IPR045198 GO:0005509|GO:0019722|GO:0019900
Lja4g4363 216 PANTHER CALCINEURIN B-LIKE PROTEIN 3 ISOFORM X2 1 216 - -
Lja4g4363 216 SMART efh_1 125 153 IPR002048 GO:0005509
Lja4g4363 216 SMART efh_1 88 116 IPR002048 GO:0005509
Lja4g4363 216 ProSiteProfiles EF-hand calcium-binding domain profile. 121 156 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4363 Lja-Chr4 77195210 77198156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4363 1 216 EF-hand Containing Proteins AT5G55990 82.895 3.10e-135 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g4363 K06268 - gmx:100791045 380.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g4363 4 77195210 77198156 Lja6g2563 6 54399543 54401553 PCT