Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2549 ATGGGGCTTGTTTCCCAGGATGCTCTCAAAGATCTTCAAGCTCTAATGGATCAAGTTGAGGAGCCACTTCAGAGAACTTTCCAGAATGTTCATCAAGGATGTGTAACTGAAACCTTAATGCGGTTTCTAAAAGCAAGGGAGTGGAATGCTTCCAAGGCCCATAAAATGTTAGTTGATTGTTTGAACTGGAGAGTGCAAAGTGAGATTGACAGCATATTATCGAAACCAATAATCCCTGAAGATCTATACAGAGCAGTGCGTGACTCACAACTCATAGGATTGTCAGGGTTCTCAAGAGAGGGTCTGCCTGTCTTTGCAATTGGTGTTGGGCTTAGTACATTTGACAAAGCATCTGTCCATTATTATGTGCAGTCTCACATTCAAATTAATGAATATCGTGACCGTGTAATCTTGCCTTCTGCATCAAAGAAGCATGGGCGCCCTATTACAACTTGTATAAAGGTTTTGGATATGACTGGCCTGAAGCTGTCAGCCCTGAATCAGATTAAGTTGTTGTCAATTATATCATCCATTGATGATCTGAACTACCCTGAGAAGACAAATACTTATTACATTGTAAATGCCCCATACATATTTTCAGCATGTTGGAAGGTTGTGAAGCCACTTTTGCAAGAGAGGACAAGAAAAAAAGTGCAAGTCTTACAAGGTTCTGGTCGAGATGAGCTGTTGAAGATCATGGATTACGCGTCTCTGCCACATTTTTCTAGAAAAGAAGGCTCTGGATCATCAAAACATGCAGAGAGTGGAAGTGAAAATTGCTATTCCTTGGATCATTCCTTCCATCAAGAGCTTTACAATTACATCAAGGAGCAATCCAGAATCCATGAAGCTGTTGAGCCCATCAAGCAGGGATCTTTCCATGTAGCTTTTCCTGAACCTCCTGCTGAGGAAGCAAACATTGCAAAGACTATAGAGTCAGAGCTACATAAGTTTGAGAAAAGCCATGGGAATGATGATCGATGA 984 0.4126 MGLVSQDALKDLQALMDQVEEPLQRTFQNVHQGCVTETLMRFLKAREWNASKAHKMLVDCLNWRVQSEIDSILSKPIIPEDLYRAVRDSQLIGLSGFSREGLPVFAIGVGLSTFDKASVHYYVQSHIQINEYRDRVILPSASKKHGRPITTCIKVLDMTGLKLSALNQIKLLSIISSIDDLNYPEKTNTYYIVNAPYIFSACWKVVKPLLQERTRKKVQVLQGSGRDELLKIMDYASLPHFSRKEGSGSSKHAESGSENCYSLDHSFHQELYNYIKEQSRIHEAVEPIKQGSFHVAFPEPPAEEANIAKTIESELHKFEKSHGNDDR* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2549 327 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 79 239 IPR001251 -
Lja6g2549 327 Gene3D - 2 286 IPR036865 -
Lja6g2549 327 PANTHER OS09G0258000 PROTEIN 1 323 - -
Lja6g2549 327 Pfam CRAL/TRIO, N-terminal domain 9 59 IPR011074 -
Lja6g2549 327 CDD SEC14 83 241 IPR001251 -
Lja6g2549 327 Pfam CRAL/TRIO domain 90 241 IPR001251 -
Lja6g2549 327 SMART CRAL_TRIO_N_2 35 60 IPR011074 -
Lja6g2549 327 SUPERFAMILY CRAL/TRIO N-terminal domain 13 75 IPR036273 -
Lja6g2549 327 SMART sec14_4 79 247 IPR001251 -
Lja6g2549 327 PANTHER - 1 323 - -
Lja6g2549 327 SUPERFAMILY CRAL/TRIO domain 81 276 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2549 Lja-Chr6 54286428 54291402 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2549 1 323 Acyl Lipid Metabolism Gene Families AT5G47730 74.613 0.0 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2549 - - gmx:100793867 582.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2549 6 54286428 54291402 Lja6g2549 6 54286428 54291402 ECH
Lja4g4354 4 77077259 77082010 Lja6g2549 6 54286428 54291402 PCT