Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4354 ATGGAGCTTGCTTCCATGGATGCCATCAACCACTTTCAGACATTGATGGACCAAGTTGAGGAGCCATTGAAGACAACGTTTCAGAATGTTCGTCAAGGACATGTCACTGAAACTTTGATACGGTTTCTAAAAGCAAGGGAGTGGGATCTTTCCAAGGCCCATAAAATGTTGGTTGATTGCTTACAATGGAGAGTACAAAATGAGATTGACAATATATTATCTAAACCAATTGTTCCTCCTGATTTATACAGAGCAATACGTGATTCACAGCTCATAGGATTGTCAGGGTATACAAGAGAGGGTCTTCCTGTCTTTGCACTTGGTGTTGGGCATAGCACATTTGACAAAGCATCTGTCCATTATTATGTGCAGTCTCACATTCAAATTAATGAATATCGTGATCGTGTTATCTTGCCTTCTGTATCAAGGAAGCATGGGCGACCTATTACCAATTGTGTTAAGATTTTAGACATGACTGGTCTGAAGCTGTCAGCTTTGAATCAGATTAAGTTGCTAACTATTATATCATCCATTGATGATCTTAACTACCCTGAGAAGACACATACTTATTTCGTTGTTAATGCTCCATACATATTTTCAGCTTGTTGGAAGGTTGTGAAGCCTCTTTTACAAGAGAGGACGAGAAGAAAAATGCAGGTCTTACCGGGTTGTGGACGGGATGAGCTGCTGAAAATCATGGATTACGCATCTTTGCCACATTTCTGTAAAAGAGAAGGCTCTGGATCATCCAAACATAGAGAAGGTGGAAGTGAAAATTGCTATTCCTTGGATCATCCCTTCCACCAACAGCTGTACCATTACATCAATCAGCAAGCCAGACTCCGTGAAGCTGTTGCACCCATCAAGCAGGGATCGTTTCATGTAGATTTTCCAGAACCTCCGGATGATGATGCAGAGATTTCTAAGACTATAGAGTCAGAGTTGCACAAATTTGTTAGCGGCAACGGTAACTAA 975 0.4103 MELASMDAINHFQTLMDQVEEPLKTTFQNVRQGHVTETLIRFLKAREWDLSKAHKMLVDCLQWRVQNEIDNILSKPIVPPDLYRAIRDSQLIGLSGYTREGLPVFALGVGHSTFDKASVHYYVQSHIQINEYRDRVILPSVSRKHGRPITNCVKILDMTGLKLSALNQIKLLTIISSIDDLNYPEKTHTYFVVNAPYIFSACWKVVKPLLQERTRRKMQVLPGCGRDELLKIMDYASLPHFCKREGSGSSKHREGGSENCYSLDHPFHQQLYHYINQQARLREAVAPIKQGSFHVDFPEPPDDDAEISKTIESELHKFVSGNGN* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4354 324 SUPERFAMILY CRAL/TRIO domain 81 278 IPR036865 -
Lja4g4354 324 Gene3D - 5 285 IPR036865 -
Lja4g4354 324 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 79 239 IPR001251 -
Lja4g4354 324 PANTHER - 3 323 - -
Lja4g4354 324 SMART sec14_4 79 247 IPR001251 -
Lja4g4354 324 Pfam CRAL/TRIO domain 90 241 IPR001251 -
Lja4g4354 324 CDD SEC14 83 241 IPR001251 -
Lja4g4354 324 Pfam CRAL/TRIO, N-terminal domain 13 59 IPR011074 -
Lja4g4354 324 SUPERFAMILY CRAL/TRIO N-terminal domain 15 76 IPR036273 -
Lja4g4354 324 PANTHER OS09G0258000 PROTEIN 3 323 - -
Lja4g4354 324 SMART CRAL_TRIO_N_2 35 60 IPR011074 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4354 Lja-Chr4 77077259 77082010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4354 1 323 Acyl Lipid Metabolism Gene Families AT5G47730 72.136 9.38e-175 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g4354 - - lja:Lj4g3v0097310.3 639.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g4354 4 77077259 77082010 Lja6g2549 6 54286428 54291402 PCT