Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2548 ATGAGCTTCAGAATCAGAGATAATCAGCCCAAAGATGCGAGTTCTCCAAGAGGAGAGGCTGCAGAGATTGACACAAGGGCACCATTCCAATCTGTCAAAGCTGCTATTGGTTTATTTGGTGAAGTAGCTGTCTCCAGGGAAAGACGTTCTAATTCTATCAAGAGAAGATCATCAGAGAATGTACTAGAAAAGGAGACTCAGCTTCTCTTGGCCCAAAGAGAACTGAACAAGATAAAGAAAAAGCTTGAAAGTGCTGAGAATACAAAATCTAAAGCACTTATTGAGCTTGACAAGGCCAATGTGACACTTCAGGAACTGACAAAGAAGCTCACCAGTGTGAGAGAATCTAAGCAATCAGCAATGGAAGCAGCTGAAGCTGTGAAGAATCAGGCCAAAGAACTTGAAAGGGCACTATCCCAAAAAGCTATAGGATATGAAGCTTGGAAACAAGAATTAGAACATGCAAGAAAGGAATATTCAACCACAGTAAAGGAACTAGATGCTTCCAAGCAAGAACTCAACAAAATAAGGCAGGATTTTGATGCTGCATTAGAGGCAAAATTGGCTGCATTCCAAACTGCAGGAGAAGCTCAGCGTTCAGCGAAATTGAACTCTGAAAAGCTTAGTGAACTCTCAAAGGAAATAGCAACCATGAAAGCATCAATTGAACAGTTGAAGCTTGCCTCTTCACAGGCCCAAGAAGAACAAGCAAATACCATGAGAGAAAGAGAGGAGAAACTAAGTTATTACAAAAGTGCAAAGGAAGAAGCAGAGTCGAAATTAGTGGCTCTAAAGAATGAGTATGACCCTGAACTGACACAAAATCTGGAGGCCAAACTTGCTGAAACAAGTGCAGAGATTCAGGAGCTTCAAGAGCAGATGAAAGACAAACATGCTTCTGAGATGGATTCTGTGAAGCTGATAACTTTGGAGATTAAAGAAGCCACAGAGACACTGCAGCAAGTTTCTGAAGAAGAAACCTCCCTGAGGAACCTTGTAGCCTCCCTTAAGGAAGAATTAGAACAAGTGAAGAAAGAGCAAGAGGAACTCAAGGAGAAGGAACACGCAGCAGAAGCTCTTGCTGCTAACTTAACTGGTGAAATACAAAGTACCAAGGACGAGACAGATTCTATGGAGAACAATAATTCTGATGCCATTCATCAGTTAAATTTGAAAATTGAGCAACTTTCATTTGGGACAGAAAATGCAAGAAGAGAAGAAGAAGAAATGAGAACAAAAGCTCAAGAGCTGAAGCAAGAAGCTGAAAATTCCAGAGCTGTGGCTGAAGAAATGGAGCAGAAGCTAGAGGTTATCTTGAAACAAGCCGAAGAAGCGAAAGCAGCAGAGCAAAAAGCCATTGAGGAAATGAAAATGTTCTCTGACTCACAAGGTGGAAGAGTCTCAGTTTCAGATTCCAATGGTAAGATCATACTGACAGTTGAGGAGTTTGCATCTCTGAGTGGGAAAATTAAGGAATCTGAAGATTTGATTGAGAGGACAGAAGCAGCTTCCATGGCTCAGGTGGAAGCAATCAACACAAGGAAAATTGAAGTGGACAAAAAAGTGGAAGCTAATCTTAAAGCAATTGAAGAAATAAAGGCTGCAACAGACTTGGCTTTGAGGAATGCAGAGATGGCAGATTCTGCAAAACTTGCAGTTGAGGGTGAACTCAGGAAGCGGCGCAATGAAGAACAGAAAATGGAATCTGATTTTCAATTCTCAGATACTTCAAGGCCAATATCTCTGCGCAGCTAG 1755 0.4142 MSFRIRDNQPKDASSPRGEAAEIDTRAPFQSVKAAIGLFGEVAVSRERRSNSIKRRSSENVLEKETQLLLAQRELNKIKKKLESAENTKSKALIELDKANVTLQELTKKLTSVRESKQSAMEAAEAVKNQAKELERALSQKAIGYEAWKQELEHARKEYSTTVKELDASKQELNKIRQDFDAALEAKLAAFQTAGEAQRSAKLNSEKLSELSKEIATMKASIEQLKLASSQAQEEQANTMREREEKLSYYKSAKEEAESKLVALKNEYDPELTQNLEAKLAETSAEIQELQEQMKDKHASEMDSVKLITLEIKEATETLQQVSEEETSLRNLVASLKEELEQVKKEQEELKEKEHAAEALAANLTGEIQSTKDETDSMENNNSDAIHQLNLKIEQLSFGTENARREEEEMRTKAQELKQEAENSRAVAEEMEQKLEVILKQAEEAKAAEQKAIEEMKMFSDSQGGRVSVSDSNGKIILTVEEFASLSGKIKESEDLIERTEAASMAQVEAINTRKIEVDKKVEANLKAIEEIKAATDLALRNAEMADSAKLAVEGELRKRRNEEQKMESDFQFSDTSRPISLRS* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2548 584 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 7 568 - -
Lja6g2548 584 PANTHER PREFOLDIN 7 568 - -
Lja6g2548 584 MobiDBLite consensus disorder prediction 362 381 - -
Lja6g2548 584 Coils Coil 273 300 - -
Lja6g2548 584 Coils Coil 208 242 - -
Lja6g2548 584 MobiDBLite consensus disorder prediction 552 571 - -
Lja6g2548 584 Coils Coil 247 267 - -
Lja6g2548 584 Coils Coil 61 141 - -
Lja6g2548 584 Coils Coil 305 381 - -
Lja6g2548 584 Coils Coil 145 186 - -
Lja6g2548 584 Pfam Weak chloroplast movement under blue light 22 566 IPR008545 -
Lja6g2548 584 Coils Coil 400 459 - -
Lja6g2548 584 MobiDBLite consensus disorder prediction 1 26 - -
Lja6g2548 584 MobiDBLite consensus disorder prediction 552 584 - -
Lja6g2548 584 MobiDBLite consensus disorder prediction 401 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2548 Lja-Chr6 54283242 54285767 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2548 - - lja:Lj6g3v1709500.1 802.357
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2548 6 54283242 54285767 Lja6g2548 6 54283242 54285767 ECH
Lja4g4353 4 77074337 77076318 Lja6g2548 6 54283242 54285767 PCT