Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2500 ATGAAGGGTCTCTTCAAGCCCAAGCCACGCACTCCTGTTGAAATCGTGCGCCAGACCAGAGATCTTCTCCTCTTCTTCGATCGTCCTCCCGAAACCCGCGAAACCAAGCGCGAAGAAAAGCAAATGTCCGAGCTGTGTAAAAATATCAGGGAGCTAAAGTCAATCCTTTATGGAAATAGTGAATCTGAACCAGTTTCAGAAGCTTGTGCACAATTGACTCAGGAATTCTTCCAAGAGAACGTGCTCCCACTGCTTATCAAATTTCTTCCAAAATTGAATTTGGAGGCCAGAAAAGATGCCACTCAAGTGGTTGCAAATTTACAAAGGCAACCGGTTCAGTCTAAGTTGATTGCATCTGATTTCCTGGAGAAAAATATAGATCTTTTGGATATTTTGATACTTGGCTATGAAAACACAGATATGGCTTTACACTACGGCGCAATGCTGAGGGAGTGCATAAGACACCAGATTGTTGCACAATATGTTCTGAACTCACCTCATATGAAGAAGTTTTTCGACTATATTCAACTTCCTAATTTCGACATAGCTGCAGATGCTGCAGCAACTTTTAAGGAACTCTTGACAAGACATAAATCCACTGTAGCTGCATTCCTTTCTACTAATTATGAATGGTTTTTTGCAGAATATAACTCTAAGCTGTTGGAGTCTACCAATTATATTACCAGGCGCCAAGCTGTCAAGTTGTTGGGAGATATGTTACTTGATCGTTCAAATTCAGCTGTAATGACTCGATATGTGAGCTCAAGAGACAACATGAGGATTTTGATGAATCTTCTACGAGAGTCCAGCAAGAGCATACAGCTAGAAGCATTTCATGTTTTCAAGCTATTTGCTGCTAACCAAAATAAACCAGCTGATATTGTGGGCATACTCGTTGCAAACAAAAGCAAGATTCTGAGACTTTTGGACGATTTCAAAATCGATAAAGAGGATGAACAGTTTGAAGCTGATAAAGCTCAAGCATTCCTCGCATCTGCCATCGACGCTGCTCAGAAAGCTGGTGAGCTTATTCGAAAAGGGTTCTACCAGACAAAACACGTTGAGCACAAAGGAGTGGTTGATTTGGTCACTGAAACTGATAAAGCATGTGAAGAACTCATCTTTACTCAGCTCAAGCAGCAATACCCGACTCACAAGTTCATTGGGGAGGAAACTACAGCTGCTTTTGGCACTACAGAACTTACAGATGATCCCACATGGATTGTTGATCCCCTGGATGGAACTACTAACTTTGTGCATGGGTTCCCCTTTGTTTGTGTCTCCATTGGTCTTACAATTGGAAAAACTCCTGAAGTTGGTGTTGTGTACAATCCGATAATGAATGAGCTGTTCACTGGTGTCCGTGGACAAGGTGCCTTTTTGAATGGGAACCCTATAAAAGTATCATCACAGACTGAACTAATGAGCTCTCTTCTTGCAACTGAGGCTGGAACTAAGCGTGACAAGATAACTCTAGATGCGTCAACCGATAGGATCAATAGCTTGCTTTTCAAGGTGAGATCTCTTCGAATGAGTGGCTCCTGTGCTCTGAATCTTTGCGGAATTGCATGTGGAAGGCTAGATGTATTCTTTGAAGTTGGCTTTGGTGGCTCATGGGATGTAGCAGGTGGTGCTGTCATTGTTAGAGAAGCTGGAGGTGTTGTATTTGATCCGTCTGGTGCAGATTTTGACATAACAGCTCAGAGAGTAGCTGCTTCAAACCCCTTCGTGAAGGATGCATTTGTTGATGCCCTTCGCGACATGGTGTGA 1770 0.4266 MKGLFKPKPRTPVEIVRQTRDLLLFFDRPPETRETKREEKQMSELCKNIRELKSILYGNSESEPVSEACAQLTQEFFQENVLPLLIKFLPKLNLEARKDATQVVANLQRQPVQSKLIASDFLEKNIDLLDILILGYENTDMALHYGAMLRECIRHQIVAQYVLNSPHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAAFLSTNYEWFFAEYNSKLLESTNYITRRQAVKLLGDMLLDRSNSAVMTRYVSSRDNMRILMNLLRESSKSIQLEAFHVFKLFAANQNKPADIVGILVANKSKILRLLDDFKIDKEDEQFEADKAQAFLASAIDAAQKAGELIRKGFYQTKHVEHKGVVDLVTETDKACEELIFTQLKQQYPTHKFIGEETTAAFGTTELTDDPTWIVDPLDGTTNFVHGFPFVCVSIGLTIGKTPEVGVVYNPIMNELFTGVRGQGAFLNGNPIKVSSQTELMSSLLATEAGTKRDKITLDASTDRINSLLFKVRSLRMSGSCALNLCGIACGRLDVFFEVGFGGSWDVAGGAVIVREAGGVVFDPSGADFDITAQRVAASNPFVKDAFVDALRDMV* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2500 589 Gene3D - 332 466 - -
Lja6g2500 589 PRINTS Inositol monophosphatase superfamily signature 361 381 IPR000760 GO:0046855
Lja6g2500 589 PRINTS Inositol monophosphatase superfamily signature 383 399 IPR000760 GO:0046855
Lja6g2500 589 PRINTS Inositol monophosphatase superfamily signature 456 479 IPR000760 GO:0046855
Lja6g2500 589 PRINTS Inositol monophosphatase superfamily signature 504 525 IPR000760 GO:0046855
Lja6g2500 589 PRINTS Inositol monophosphatase superfamily signature 407 423 IPR000760 GO:0046855
Lja6g2500 589 PRINTS Inositol monophosphatase superfamily signature 536 560 IPR000760 GO:0046855
Lja6g2500 589 Gene3D - 3 331 IPR011989 -
Lja6g2500 589 Gene3D - 467 588 - -
Lja6g2500 589 Pfam Mo25-like 4 327 IPR013878 -
Lja6g2500 589 PANTHER OS07G0585100 PROTEIN 1 329 - -
Lja6g2500 589 CDD IMPase 329 574 IPR033942 GO:0008934|GO:0046855
Lja6g2500 589 ProSitePatterns Inositol monophosphatase family signature 1. 407 420 IPR020583 -
Lja6g2500 589 SUPERFAMILY Carbohydrate phosphatase 328 587 - -
Lja6g2500 589 PRINTS Lithium-sensitive myo-inositol monophosphatase family signature 481 491 IPR020552 GO:0046854
Lja6g2500 589 PRINTS Lithium-sensitive myo-inositol monophosphatase family signature 458 476 IPR020552 GO:0046854
Lja6g2500 589 PRINTS Lithium-sensitive myo-inositol monophosphatase family signature 430 440 IPR020552 GO:0046854
Lja6g2500 589 PRINTS Lithium-sensitive myo-inositol monophosphatase family signature 340 359 IPR020552 GO:0046854
Lja6g2500 589 PANTHER CALCIUM-BINDING PROTEIN 39-RELATED 1 329 IPR013878 -
Lja6g2500 589 Pfam Inositol monophosphatase family 329 583 IPR000760 GO:0046855
Lja6g2500 589 ProSitePatterns Inositol monophosphatase family signature 2. 539 553 IPR020550 GO:0046854
Lja6g2500 589 SUPERFAMILY ARM repeat 10 325 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2500 Lja-Chr6 53861846 53871792 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2500 K08272 - gmx:100797189 568.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2500 6 53861846 53871792 Lja6g2500 6 53861846 53871792 ECH
Lja4g4325 4 76811372 76815341 Lja6g2500 6 53861846 53871792 PCT