Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2475 ATGGTAGTTTCGAAGATGAAGACGACGGCGCGCTCCAAATCGGAATCGAAGACCTACGAAGAATGGTTCAAATTGGCAGATTCAGATGGTGATGGTCGCATCAGTGGGAACGATGCTACCAATTTCTTCGCTCTCTCGAACTTGTCTCGCTCTCAACTCAAGCAGCTTTGGGCTCTCGCTGATACCAAGCGACAAGGCTTTCTTTCTTTCCCTGAGTTCGTTACTGCGATGCAGTTGGTTTCACTGGCACAAGCAGAATACGAATTGAACTCAGATATCCTCAAAACTGAAATTGACAAGGAGAATATCAAACCTCCGGTGATGGAAGGACTTGATGCTTTTGCGAAGAAGAAGAGTTTAACAATTAATACCCTACCAGAAGTAAATGAGATTGCTAAGCCTCAACCATTTCTGGCTAACCCATGGTTTGCGTCAAAATCTTCGAAGAAGTTACCTCCAAGTGCAGTTACATCAATAGTTGATGGATTGAAGAGACTGTATAATGAGAGGCTAAAGCCCCTGGAAATCGCTTATCAATATAATGATTTTGCATCCCCATTGTTGACCAGCAGTGACTTTGATGCGAAACCCATGGTCATGCTTCTTGGTCAATATTCCACAGGAAAAACAACATTTATAAAACATTTGCTAAAATGTGACTATCCAGGAGCACATGTTGGACCAGAACCTACAACCGATAGATTTGTTGTTGTTATGTCAGGACCTGATGAGAGGAGTGTTCCTGGAAATACTATAGCTGTTGATGCTGACATGCCTTTTAGTGGCCTAACAACATTTGGAGGTTCATTCTTATCGAAGTTCCAATGTTCTCAAATGCCACATCCATTGCTAGATGAAGTAACAATTGTGGACACTCCTGGTGTCCTATCTGGAGAGAAACAAAGGACTCAACGAAGCTATGATTTCACTGGTGTTGTTTCTTGGTTTGCTGCCAAATGTGATCTCATTCTTCTCCTATTTGATCCCCATAAACTTGACATCAGTGATGAGTTTAAACGAGTAATTGCATCTCTACATGGTAATGATGATAAGATACGGGTGGTTTTGAACAAGGCAGACCAAGTTAATACTCAACAGCTTATGAGAGTTTATGGAGCCTTGATGTGGTCATTGGGGAAAGTTTTAAATACCCCTGAAGTTTCACGTGTATACATTGGGTCATTTAATGATAAACCTATGGATGGAGGCTGTTCATTAGGACGGGATCTTTTTGAGAAGGAACAGAATGATCTACTAGCGGATTTGGTAGATATTCCAAAGAAGGCTGTCGATCGTCGGATAAATGAATTCGTTAAACGTGCTAGATCTGCAAAGATTCATGCATATATAATTAGCCATCTTAAGAAGGAGATGCCTGCAATAATGGGCAAAGCCAAGGCTCAACAAAAGCTTATAGATAACCTTGATGTTGAATTTGCAAAGGTTCAAAGGGAGTATCATCTACCAGCCGGTGATTTTCCCAATGTAGAGCACTTCAAAGAAGTTTTAAGCCGTTATAGCATCGACAAATTTGAGAAACTAAAGCCTAAAATGATTCAAGCAGTGGATGACATGCTTGGGTATGAAATACCAGAGCTTTTGAGGAAATTCAGAAATCCTTATGAATAG 1629 0.4082 MVVSKMKTTARSKSESKTYEEWFKLADSDGDGRISGNDATNFFALSNLSRSQLKQLWALADTKRQGFLSFPEFVTAMQLVSLAQAEYELNSDILKTEIDKENIKPPVMEGLDAFAKKKSLTINTLPEVNEIAKPQPFLANPWFASKSSKKLPPSAVTSIVDGLKRLYNERLKPLEIAYQYNDFASPLLTSSDFDAKPMVMLLGQYSTGKTTFIKHLLKCDYPGAHVGPEPTTDRFVVVMSGPDERSVPGNTIAVDADMPFSGLTTFGGSFLSKFQCSQMPHPLLDEVTIVDTPGVLSGEKQRTQRSYDFTGVVSWFAAKCDLILLLFDPHKLDISDEFKRVIASLHGNDDKIRVVLNKADQVNTQQLMRVYGALMWSLGKVLNTPEVSRVYIGSFNDKPMDGGCSLGRDLFEKEQNDLLADLVDIPKKAVDRRINEFVKRARSAKIHAYIISHLKKEMPAIMGKAKAQQKLIDNLDVEFAKVQREYHLPAGDFPNVEHFKEVLSRYSIDKFEKLKPKMIQAVDDMLGYEIPELLRKFRNPYE* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2475 542 Gene3D - 8 108 - -
Lja6g2475 542 ProSiteProfiles EH domain profile. 15 84 IPR000261 GO:0005515
Lja6g2475 542 Pfam Domain of unknown function (DUF5600) 432 533 IPR040990 -
Lja6g2475 542 Gene3D - 163 533 - -
Lja6g2475 542 PANTHER EH DOMAIN 20 540 - -
Lja6g2475 542 SMART efh_1 52 80 IPR002048 GO:0005509
Lja6g2475 542 SMART efh_1 18 46 IPR002048 GO:0005509
Lja6g2475 542 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 464 IPR027417 -
Lja6g2475 542 Pfam Dynamin family 199 358 IPR045063 -
Lja6g2475 542 Coils Coil 465 485 - -
Lja6g2475 542 CDD EHD 198 440 - -
Lja6g2475 542 ProSiteProfiles EF-hand calcium-binding domain profile. 48 83 IPR002048 GO:0005509
Lja6g2475 542 CDD EH 19 85 IPR000261 GO:0005515
Lja6g2475 542 Pfam Cytoskeletal-regulatory complex EF hand 13 80 IPR000261 GO:0005515
Lja6g2475 542 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 193 426 IPR030381 GO:0005525
Lja6g2475 542 SUPERFAMILY EF-hand 12 86 IPR011992 -
Lja6g2475 542 Gene3D - 199 425 IPR027417 -
Lja6g2475 542 PANTHER CALCIUM-BINDING EF HAND PROTEIN 20 540 - -
Lja6g2475 542 Pfam N-terminal EH-domain containing protein 162 194 IPR031692 -
Lja6g2475 542 SMART eh_3 8 103 IPR000261 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2475 Lja-Chr6 53672367 53676462 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2475 13 542 EF-hand Containing Proteins AT4G05520 74.624 0.0 853
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2475 K12483 - gmx:100805498 945.266
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2475 6 53672367 53676462 Lja6g2475 6 53672367 53676462 ECH
Lja4g4304 4 76652001 76656547 Lja6g2475 6 53672367 53676462 PCT