Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4304 ATGAATGGAAATGGAGCAGAAGAAGAAGTTGGTATAAAACCAGTGGCGGTGCAAATTCAAAATGGCGAGAAAGAAAGCGTAATCTGTACTCCAGTGAATTCAAGATCCCCTCCCCTGGTTTTGTGTTGCCCACTCCAAACAAACACGCATCACATCACATCAGAAACGATTCAAACTGTTATTCAGCTCCGGAAGATGAAAACAGTGTCCGATTGGATCGATTCGTGTTCGAAGGAGCAAACCAACACGTACCACCAATGGTTCAACTTGGCCGATTCAGATGGAGATGGCCGTATCACTGGCAACGATGCTACCAAGTTCTTTGCTCTCTCCAACTTATCTCGCTCTCAACTCAAGCAGGTTTGGGCTATAGCTGATACAAAGAGACAAGGATTTCTAGGTTTACAAGAGTTTGTAACCGCAATGCAGCTCGTTTCCCTGGCACAGGCTGGATATGATATCAGCTATGATATCCTTAAAACTGAAATTGACAGTGAAAATATTAAACCCCCAGTAATGGAAGGAATCGATGCTTTAGTAGCAAAAACAAAGAGTTCAACAACAAATTCCCAACCCGATGAATTAGGGACTTCTCAGCCTCAACCTTCGCCACCTAGTCCTTGGGTTGCTCCTAAATCTGTAAAGAAATTGCCTCTCAATGCAGTCACATCAATAATTGATGGCTTGAAAAGGTTGTATATACAGAAGCTAAAGCCATTGGAGGTCACTTACCGATTCAATGATTTTGTATCTCCATTATTGACCGACAGTGATTTCGATGCTAAACCGATGGTGATGCTTCTTGGTCAGTATTCGACAGGGAAAACAACATTCATAAAACATTTACTAAGATGTGATTATCCAGGGGCACACATTGGGCCAGAGCCTACAACTGACAGATTTGTTGTTGTCATGTCTGGACCTGATGAGAGGAGTATTCCTGGAAATACTGTAGCTGTTGATGCTGCCATGCCTTTTAGTGGGCTGACAACTTTTGGCGGTTCATTTCTGTCAAAGTTCCAATGTTCTCAAATGCCGCATCCACTGCTAGATGAAATAACATTTGTGGACACTCCTGGTGTCCTCTCTGGAGAAAAGCAACGGACTCAACGAAGTTATGATTTCACCGGTGTTATATCTTGGTTTGCTGCAAAATGTGATCTGATTCTTCTCTTATTTGATCCTCATAAGCTTGACATTAGTGATGAATTCAAGCGTGTAATTGGATCACTACGTGGTCATGATGACAAGATACGTGTGGTTTTGAACAAGGCAGACCAAATTGATACTCAACAACTTATGAGAGTTTATGGAGCATTGATGTGGTCTCTTGGGAAGGTTCTGAATACACCTGAAGTTGTGCGTGTATATATCGGCTCATTTAATGATAAGCCTATAACTGAAGGCTTTGTTGGCCCATTAGGACAGGAGCTCTTTGAGAAGGAACAGAATGATCTCCTTGCAGATTTGGTAGATATTCCAAGAAAGGCTTGTGATAGTCGGATCAACGAATTTGTGAAACGGGCTAGATCTGCTAAAATCCATGCCCATATAATTAGCCATCTTAGGAATGAGATGCCTGCAATTATGGGCAAGGCTAAGGCTCAACAAAGGCTTATTGATGAACTTGAAGATGAATTTAAAAAGGTTCAAAGAGAGTTTCATCTCCCAGCTGGCGATTTTCCAAATGTAGAACAGTTCAGAGAGGTTTTGAGTGGTTATAGCATCGACAAATTTGAGAAACTAAAGCCCAAAATGATTCAAGCCGTAGATGACATGCTTGGATATGAAATACCTGAGCTGCTAAAGAACTTCAGAAATCCTTATGATTAA 1833 0.4152 MNGNGAEEEVGIKPVAVQIQNGEKESVICTPVNSRSPPLVLCCPLQTNTHHITSETIQTVIQLRKMKTVSDWIDSCSKEQTNTYHQWFNLADSDGDGRITGNDATKFFALSNLSRSQLKQVWAIADTKRQGFLGLQEFVTAMQLVSLAQAGYDISYDILKTEIDSENIKPPVMEGIDALVAKTKSSTTNSQPDELGTSQPQPSPPSPWVAPKSVKKLPLNAVTSIIDGLKRLYIQKLKPLEVTYRFNDFVSPLLTDSDFDAKPMVMLLGQYSTGKTTFIKHLLRCDYPGAHIGPEPTTDRFVVVMSGPDERSIPGNTVAVDAAMPFSGLTTFGGSFLSKFQCSQMPHPLLDEITFVDTPGVLSGEKQRTQRSYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIGSLRGHDDKIRVVLNKADQIDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPITEGFVGPLGQELFEKEQNDLLADLVDIPRKACDSRINEFVKRARSAKIHAHIISHLRNEMPAIMGKAKAQQRLIDELEDEFKKVQREFHLPAGDFPNVEQFREVLSGYSIDKFEKLKPKMIQAVDDMLGYEIPELLKNFRNPYD* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4304 610 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 259 494 IPR030381 GO:0005525
Lja4g4304 610 ProSiteProfiles EF-hand calcium-binding domain profile. 113 148 IPR002048 GO:0005509
Lja4g4304 610 SMART eh_3 73 168 IPR000261 GO:0005515
Lja4g4304 610 Gene3D - 75 173 - -
Lja4g4304 610 SMART efh_1 83 111 IPR002048 GO:0005509
Lja4g4304 610 SMART efh_1 117 145 IPR002048 GO:0005509
Lja4g4304 610 CDD EHD 264 508 - -
Lja4g4304 610 Pfam N-terminal EH-domain containing protein 228 260 IPR031692 -
Lja4g4304 610 Pfam Cytoskeletal-regulatory complex EF hand 80 145 IPR000261 GO:0005515
Lja4g4304 610 Pfam Dynamin family 265 424 IPR045063 -
Lja4g4304 610 Gene3D - 229 601 - -
Lja4g4304 610 MobiDBLite consensus disorder prediction 184 211 - -
Lja4g4304 610 Coils Coil 533 553 - -
Lja4g4304 610 Pfam Domain of unknown function (DUF5600) 501 601 IPR040990 -
Lja4g4304 610 PANTHER EH DOMAIN 84 608 - -
Lja4g4304 610 ProSiteProfiles EH domain profile. 80 174 IPR000261 GO:0005515
Lja4g4304 610 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 255 532 IPR027417 -
Lja4g4304 610 CDD EH 84 150 IPR000261 GO:0005515
Lja4g4304 610 SUPERFAMILY EF-hand 69 154 IPR011992 -
Lja4g4304 610 Gene3D - 265 493 IPR027417 -
Lja4g4304 610 PANTHER EH DOMAIN-CONTAINING PROTEIN 2 84 608 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4304 Lja-Chr4 76652001 76656547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4304 73 610 EF-hand Containing Proteins AT4G05520 77.323 0.0 887
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g4304 K12483 - gmx:100786047 1001.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g4304 4 76652001 76656547 Lja6g2475 6 53672367 53676462 PCT