Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2438 ATGGGAAACAAGTTGAATGTGGTGGTGTTGTGTTTGTGTGTGTGGACCCTGTTGTGTTGTCTGGCATCTTGTGCACATGATGAAGGGTTGCGTAGGATTGGACTAAGAAAGACCAAATTGGGCCCCAATGACCGGTTGGGGTTTAAGGATGCAGAATCTATGTGGTCTTCTATCAGGAAGTATCATTACCAACCCCTGAACATTCTCGGACTCAATCAGGACACTGATATTGTTGCGCTCAAGAATTACATGGATGCTCAGTACTATGGTGAAGTTTTTGTTGGCACCCCTCCTCAAAGGTTCACTGTGATTTTTGATACCGGTAGCTCTAACATGTGGGTTCCATCAGCTAAATGTCACTTCTCGGTAGCATGCTTATTCCATGCCAAGTACAGGTCTAGTCAATCAAGTACCTACAAGGAAAATGGGACTTCTGCTGCAATACAATATGGAACTGGAGCAATTTCAGGCTTCTTTAGCTATGATGATGTCAAAGTTGGTGACATAGTTGTAAAGAACCAGGAATTTATTGAAGCAACTAGAGAGCCTGGAGTTACATTTGTGGCAGCTAAGTTCGATGGTATACTAGGACTTGGATTTCAAGAGATATCAGTTGGAAATTCTGTTCCAGTGTGGTACAATATGGTTGAACAAGGGCTTGTTAAGGATCCAGTATTTTCATTTTGGCTCAATCGTAAAATAGGAGAAGAGCAAGGAGGTGAGATTGTTTTTGGTGGTGTTGATCCTGCTCACTTCAAGGGCCAACACACTTATGTGCCTGTGACCCGGAAAGGATATTGGCAGTTTGCCATGGGAGATGTATTTATTGGTGGTAAACCCACTGGATACTGTACCAATGGGTGTTCAGCAATTGCAGACTCAGGGACGTCTTTGTTGGCGGGTCCAACGACTGTGATTACTATGATAAATCAAGCAATTGGAGCATCTGGAGTTGCAAGCCAAGAATGCAAGTCTGTTGTTGAACAGTATGGACAAACAATTTTGGAATTGGTCTCGGCTAATGCGCATCCAAAGAAGATATGCTCCCAAATTGGATTGTGCACCTTTGATGGGACTCGTGGTGTCAGCATGGGTATCGAAAGCGTGGTAGATAAGAATGAAAGAAAATCATTTGGTGACTTTCGGGATGCTACTTGTTCTGCATGTGAGATGGCTGTTGTATGGATACAGAACCAGTTGAAGCAGAATCAGACACAAGATCGCATAATGAATTATATCAATGAGCTTTGTGATAAAATGCCTAACCCAATGGGAGCATCAGCTGTTGACTGTGGAAAGATCTCTTCAATGCCTATTGTTTCCTTCACTATTGGTGGAAAGGTTTTTGACCTTGCTCCACAGGAGTACATACTGAAGGTGGGTGAAGGTTCTGCAGCCCAATGCATTAGTGGCTTTACCGCTTTGGATGTTCCTCCTCCACGCGGTCCACTCTGGATTCTTGGAGATATCTTCATGGGGCGCTATCACACTGTCTTTGATTTTGGTAAACAGAGAGTCGGATTTGCTCAAGCAGCATAG 1539 0.4366 MGNKLNVVVLCLCVWTLLCCLASCAHDEGLRRIGLRKTKLGPNDRLGFKDAESMWSSIRKYHYQPLNILGLNQDTDIVALKNYMDAQYYGEVFVGTPPQRFTVIFDTGSSNMWVPSAKCHFSVACLFHAKYRSSQSSTYKENGTSAAIQYGTGAISGFFSYDDVKVGDIVVKNQEFIEATREPGVTFVAAKFDGILGLGFQEISVGNSVPVWYNMVEQGLVKDPVFSFWLNRKIGEEQGGEIVFGGVDPAHFKGQHTYVPVTRKGYWQFAMGDVFIGGKPTGYCTNGCSAIADSGTSLLAGPTTVITMINQAIGASGVASQECKSVVEQYGQTILELVSANAHPKKICSQIGLCTFDGTRGVSMGIESVVDKNERKSFGDFRDATCSACEMAVVWIQNQLKQNQTQDRIMNYINELCDKMPNPMGASAVDCGKISSMPIVSFTIGGKVFDLAPQEYILKVGEGSAAQCISGFTALDVPPPRGPLWILGDIFMGRYHTVFDFGKQRVGFAQAA* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2438 512 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 6 512 IPR001461 GO:0004190|GO:0006508
Lja6g2438 512 CDD phytepsin 78 510 IPR033869 GO:0004190
Lja6g2438 512 Pfam Eukaryotic aspartyl protease 87 511 IPR033121 -
Lja6g2438 512 ProSiteProfiles Peptidase family A1 domain profile. 88 509 IPR033121 -
Lja6g2438 512 Pfam Saposin-like type B, region 2 321 354 IPR008138 -
Lja6g2438 512 Gene3D Acid Proteases 31 246 IPR021109 -
Lja6g2438 512 PANTHER FUNGAL PROTEINASE A, ASPARTIC PROTEINASE SUPERFAMILY PROTEIN 6 512 - -
Lja6g2438 512 SUPERFAMILY Saposin 320 421 IPR011001 -
Lja6g2438 512 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 290 301 IPR001969 GO:0004190|GO:0006508
Lja6g2438 512 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 103 114 IPR001969 GO:0004190|GO:0006508
Lja6g2438 512 Gene3D Acid Proteases 247 512 IPR021109 -
Lja6g2438 512 ProSiteProfiles Saposin B type domain profile. 382 423 IPR008139 -
Lja6g2438 512 Pfam Saposin-like type B, region 1 385 421 IPR007856 GO:0006629
Lja6g2438 512 ProSiteProfiles Saposin B type domain profile. 318 358 IPR008139 -
Lja6g2438 512 PRINTS Pepsin (A1) aspartic protease family signature 485 500 IPR001461 GO:0004190|GO:0006508
Lja6g2438 512 PRINTS Pepsin (A1) aspartic protease family signature 94 114 IPR001461 GO:0004190|GO:0006508
Lja6g2438 512 PRINTS Pepsin (A1) aspartic protease family signature 240 253 IPR001461 GO:0004190|GO:0006508
Lja6g2438 512 PRINTS Pepsin (A1) aspartic protease family signature 290 301 IPR001461 GO:0004190|GO:0006508
Lja6g2438 512 Gene3D - 318 421 - -
Lja6g2438 512 SUPERFAMILY Acid proteases 14 511 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2438 Lja-Chr6 53188636 53192715 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2438 K08245 - gmx:100801598 850.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2438 6 53188636 53192715 Lja6g2438 6 53188636 53192715 ECH
Lja6g2438 6 53188636 53192715 Lja4g4278 4 76424244 76429265 ECH
Lja4g4278 4 76424244 76429265 Lja6g2438 6 53188636 53192715 PCT