Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4278 ATGGGAAGAAACAAGTTGCTATGTTTGTTTGTGTCAACCCTGTTGTTGCTTTCTGTGGTGTCATGTGCACCCAATGATGATGGGCTGCACAGGATTGGACTGAAAAAGATTAAACTGGACAGAAACAACAGGCTTGCTGGTAGAATTGGAACCAAGGAATCTGAGTCTTTTAGAGCTTCCATTAGAAAGTATCACCTCCAAAACAACTTTGTTGACACTGAGGAAACTGATATTGTTGCCTTGAAGAATTACTTGGATGCTCAGTATTATGGTGAAATATCCATTGGAACCTCTCCTCAGAAATTCACTGTTATTTTCGACACCGGAAGCTCGAACTTGTGGGTTCCATCATCTAAATGTACCTTCTCGGTTGCATGCTACTTCCATGCCAAGTACAAGTCCAGCAGATCAAGTACTTATAAGAAAAATGGGACTGCTGCTGCAATTCAATATGGTACTGGAGCAATTTCTGGTTTCTTTAGTTATGACAGCGTTAAAGTTGGTGACATAGTTGTAAAGAACCAGGAATTTATTGAAGCAACTAAGGAGCCTAGTGTTACATTTTTGGTGGCCAAGTTCGATGGTATACTTGGGCTTGGATTTAAAGAGATATCAGTTGGAAATGCTGTTCCAGTGTGGTACAATATGGTTGAACAAGGTCTTATCAAGGAGCCTGTATTTTCGTTTTGGCTCAACCGTAAACCAGAGGAAGAGGAAGGCGGTGAGATTGTTTTTGGTGGTGTTGATCCTGCCCACTACAAGGGAAATCACACTTACGTGCCTGTGACAAGAAAAGGATATTGGCAGTTTGACATGGGAGATGTACTCATTGACGGTAAATCAACTGGATATTGCGCTGATGGATGTTCAGCCATTGCGGACTCAGGAACTTCTTTATTGACAGGTCCAACGACTGTGATTACCATGATAAACCATGCAATTGGAGCATCTGGAGTTGTAAGCACAGAATGCAAAGCCATTGTTGCGGAGTATGGACAGACAATCATTGACCTGCTTTTGGCTGATGCAGAGCCCAAGAAGGTCTGCTCCCAAATTGGATTGTGCACTTTTGATGGGACTCATGGTGTTAATGGGGGTATCGAGAGCGTAGTGGATGAGAATGATAGAAAATCGTCTGGCCGTGGTCTTCATGGTGCTGGTTGTTCTGCTTGTGAGATGGCGGTTGTTTGGATGCAGAATCAGCTGGGCCAAAATCAGACACGAGATCAGATACTAAGCTATATCAATAACCTTTGTGATAAAATGCCTAGTCCAATGGGAGAATCAGCTGTTGACTGTGGGAGTATCTCTTCTCTGCCTGTCATTTCCTTGACAATTGGTGGAAGAACTTTTGATCTTGGTCCAGAGGAGTACATACTCAAAGTGGGAGAAGGTCCTGCGGCTCAGTGCATTAGCGGCTTTACTGCTATGGATATTCCTCCTCCACGTGGACCTCTCTGGATCCTTGGAGATGTGTTCATGGGGCGTTATCACACAGTCTTTGATTTTGGTAAATCGAGAGTTGGATTTGCTAAAGCAGCATAG 1545 0.435 MGRNKLLCLFVSTLLLLSVVSCAPNDDGLHRIGLKKIKLDRNNRLAGRIGTKESESFRASIRKYHLQNNFVDTEETDIVALKNYLDAQYYGEISIGTSPQKFTVIFDTGSSNLWVPSSKCTFSVACYFHAKYKSSRSSTYKKNGTAAAIQYGTGAISGFFSYDSVKVGDIVVKNQEFIEATKEPSVTFLVAKFDGILGLGFKEISVGNAVPVWYNMVEQGLIKEPVFSFWLNRKPEEEEGGEIVFGGVDPAHYKGNHTYVPVTRKGYWQFDMGDVLIDGKSTGYCADGCSAIADSGTSLLTGPTTVITMINHAIGASGVVSTECKAIVAEYGQTIIDLLLADAEPKKVCSQIGLCTFDGTHGVNGGIESVVDENDRKSSGRGLHGAGCSACEMAVVWMQNQLGQNQTRDQILSYINNLCDKMPSPMGESAVDCGSISSLPVISLTIGGRTFDLGPEEYILKVGEGPAAQCISGFTAMDIPPPRGPLWILGDVFMGRYHTVFDFGKSRVGFAKAA* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4278 514 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 104 115 IPR001969 GO:0004190|GO:0006508
Lja4g4278 514 PRINTS Pepsin (A1) aspartic protease family signature 95 115 IPR001461 GO:0004190|GO:0006508
Lja4g4278 514 PRINTS Pepsin (A1) aspartic protease family signature 291 302 IPR001461 GO:0004190|GO:0006508
Lja4g4278 514 PRINTS Pepsin (A1) aspartic protease family signature 487 502 IPR001461 GO:0004190|GO:0006508
Lja4g4278 514 PRINTS Pepsin (A1) aspartic protease family signature 241 254 IPR001461 GO:0004190|GO:0006508
Lja4g4278 514 PANTHER ASPARTIC PROTEINASE-LIKE 7 514 - -
Lja4g4278 514 ProSiteProfiles Saposin B type domain profile. 384 425 IPR008139 -
Lja4g4278 514 SUPERFAMILY Saposin 320 423 IPR011001 -
Lja4g4278 514 CDD phytepsin 79 512 IPR033869 GO:0004190
Lja4g4278 514 Gene3D Acid Proteases 30 247 IPR021109 -
Lja4g4278 514 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Lja4g4278 514 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 7 514 IPR001461 GO:0004190|GO:0006508
Lja4g4278 514 Gene3D - 319 423 - -
Lja4g4278 514 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 291 302 IPR001969 GO:0004190|GO:0006508
Lja4g4278 514 Gene3D Acid Proteases 248 514 IPR021109 -
Lja4g4278 514 Pfam Saposin-like type B, region 1 387 423 IPR007856 GO:0006629
Lja4g4278 514 ProSiteProfiles Peptidase family A1 domain profile. 89 511 IPR033121 -
Lja4g4278 514 Pfam Eukaryotic aspartyl protease 88 513 IPR033121 -
Lja4g4278 514 Pfam Saposin-like type B, region 2 323 355 IPR008138 -
Lja4g4278 514 ProSiteProfiles Saposin B type domain profile. 319 359 IPR008139 -
Lja4g4278 514 SUPERFAMILY Acid proteases 14 513 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4278 Lja-Chr4 76424244 76429265 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g4278 K08245 - gmx:100779619 884.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g4278 4 76424244 76429265 Lja4g4278 4 76424244 76429265 ECH
Lja6g2438 6 53188636 53192715 Lja4g4278 4 76424244 76429265 ECH
Lja4g4278 4 76424244 76429265 Lja6g2438 6 53188636 53192715 PCT