Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2418 ATGGCCGCCAAATCCTCTTTCAAGCTTCAACATCCTCTGGAAAGAAGGCAAGCTGAATCTGGTCGCATCAGGGAGAAGTATCCTGATAGAATACCTGTGATTGTGGAGAAAGCTGACAGAACTGATATTCCAGACATTGATAAGAAGAAGTACCTTGTCCCAGCTGACTTGACTGTTGGTCAGTTTGTTTATGTTGTCCGCAAAAGAATTAAGCTAAGTGCAGAGAAGGCTATTTTTGTTTTCATCAAAAACACTCTACCTCCAACTGCTTCATTGATGTCTGCTGTTTATGAGGAAAATAAGGATGAAGATGGCTTTCTTTACATGACTTACAGTGGAGAGAACACCTTTGGATCCCACTAG 363 0.416 MAAKSSFKLQHPLERRQAESGRIREKYPDRIPVIVEKADRTDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFVFIKNTLPPTASLMSAVYEENKDEDGFLYMTYSGENTFGSH* 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2418 120 CDD Ubl_ATG8 13 115 - -
Lja6g2418 120 PANTHER AUTOPHAGY-RELATED PROTEIN 3 118 - -
Lja6g2418 120 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED 3 118 IPR004241 -
Lja6g2418 120 MobiDBLite consensus disorder prediction 1 22 - -
Lja6g2418 120 Gene3D - 1 118 - -
Lja6g2418 120 SUPERFAMILY Ubiquitin-like 4 118 IPR029071 -
Lja6g2418 120 Pfam Autophagy protein Atg8 ubiquitin like 15 118 IPR004241 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2418 Lja-Chr6 53027246 53029669 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2418 K08341 - gmx:100784677 224.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2418 6 53027246 53029669 Lja6g2418 6 53027246 53029669 ECH
Lja3g1076 3 11180488 11183010 Lja6g2418 6 53027246 53029669 ECH