Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1076 ATGGCTAAGAGCTCATTCAAGATGGAACACCCACTTGAAAGGAGACAGGCTGAAGCAGCTCGCATAAGAGAGAAGTATCCTGACAGAATTCCGGTTATTGTTGAAAGGGCAGAGAAGAGTGATGTTCCTGAAATTGATAAGAAAAAGTATCTTGTTCCTGCTGATTTAACTGTTGGCCAATTTGTGTATGTGGTGCGTAAGAGAATCAAGCTGAGTCCTGAGAAGGCCATCTTCATTTTTGTCAAGAACATTTTGCCCCCAACTGCGGCCATGATGTCTGCAATTTATGAGGAAAATAAGGATGAAGATGGATTCCTTTATATGACTTACAGTGGGGAGAACACATTTGGGATGATGATCTGA 363 0.4187 MAKSSFKMEHPLERRQAEAARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGMMI* 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1076 120 Gene3D - 1 118 - -
Lja3g1076 120 PANTHER AUTOPHAGY-RELATED PROTEIN 1 117 - -
Lja3g1076 120 CDD Ubl_ATG8 12 114 - -
Lja3g1076 120 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED 1 117 IPR004241 -
Lja3g1076 120 Pfam Autophagy protein Atg8 ubiquitin like 14 117 IPR004241 -
Lja3g1076 120 SUPERFAMILY Ubiquitin-like 3 117 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1076 Lja-Chr3 11180488 11183010 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1076 K08341 - gmx:100301895 227.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1076 3 11180488 11183010 Lja6g2418 6 53027246 53029669 ECH
Lja3g1076 3 11180488 11183010 Lja3g1076 3 11180488 11183010 ECH