Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2272 ATGCTTTTGGCATTGCTCTTGCTGCTGGCACTGAGCAATGCCTTGAGAGCTTATGGAGTTGGTGAGCAATGTGGTTCTAATCCAACACTAGATCCTAGACCCCACAGTGTCTCCATTTCTGAGTTTGGTGCTGTTGGAGATGGCAAAACACTGAACACCATTGCATTCCAGAATGCTATCTTCTATCTCAAGTCTTTTGCTGACAAGGGTGGCGCTCAGCTGTACGTCCCGCCCGGAAAATGGCTCACCGGCAGTTTCAACCTTACCAGCCATCTCACCCTCTTTTTGGAAAAAGGTGCTGTCATCATTGGATCTCAGGATCCATCTCACTGGGAAGTTATTGAACCCTTACCTTCTTATGGCCGAGGGCTCGAAGTCCCTGGGGGAAGATATCAGAGCTTGATAAATGGATACAAGTTACATGATGTGGTCATAACAGGTAACAATGGAACCATTGATGGCATGGGAATGGTTTGGTGGGAGTGGTATAGCTCCCATTCCTTAAACCACAGCCGTCCTCATCTGGTTGAACTTGTTGCATCTGATTATGTAGTAGTTTCAAATCTCACATTCTTGAATGCCCCATTATATAGCATCCACCCAGTTTATTGCAGCAATGTACATATTCAAAACGTTTCAATCTCTACTCCTCCAGAATCCCCTCATACTATTGGCATAGTACCAGATTCTTCTGATAATGTATGTATAGAAGATTGTATCCTTGCTTTGGGATTTGATGCAATTACTCTGAAAAGTGGCTGGGATGAGTATGGCATTGCCTATGGCAGGCCAACTGAGAATGTACACATAAGAAGGGTGCATCTTCAAGCATCTTCTGGCTCTGCTATTGCATTTGGCAGTGACATGTCTGGCGGAATTTCAAATGTTTTGGTGGAGCATGTTCATCTTTTCAACTCAAATAGTGGTATTGGATTCAGAACCACAGAAGGAAGAGGTGGTTACATGAAGGAAATTGTTCTATCAGATATACAGATGGAGAATATCCACACGGCAATCGCGGTCACAGGTCATTGCGGGTCTCATCCTGATGACAAATTTGATCCAAATGCCCTCCCAATTTTGGATCAAATCACCTTGAAGGATGTTACTGGCAAAAACATCACCATTGCTGGAAACTTTGCTGGAATAGAAAAATCCCCCTTCACTAACATATGCCTTTCCAACATAACCTTTTCTATAAATCCTGTTTCTCCTCTCATTACATGGGAATGCTCAAATGTCTATGGATTTTCAGAATCTGTGTTCCCTGAACCTTGTTCAGAACTTGGGAACCCCACAAATTCTTCATCATCATCATGTTACTACCTGCAGAGTATCAGTGGAAAAACTGCTGAGCTTTGA 1362 0.4325 MLLALLLLLALSNALRAYGVGEQCGSNPTLDPRPHSVSISEFGAVGDGKTLNTIAFQNAIFYLKSFADKGGAQLYVPPGKWLTGSFNLTSHLTLFLEKGAVIIGSQDPSHWEVIEPLPSYGRGLEVPGGRYQSLINGYKLHDVVITGNNGTIDGMGMVWWEWYSSHSLNHSRPHLVELVASDYVVVSNLTFLNAPLYSIHPVYCSNVHIQNVSISTPPESPHTIGIVPDSSDNVCIEDCILALGFDAITLKSGWDEYGIAYGRPTENVHIRRVHLQASSGSAIAFGSDMSGGISNVLVEHVHLFNSNSGIGFRTTEGRGGYMKEIVLSDIQMENIHTAIAVTGHCGSHPDDKFDPNALPILDQITLKDVTGKNITIAGNFAGIEKSPFTNICLSNITFSINPVSPLITWECSNVYGFSESVFPEPCSELGNPTNSSSSSCYYLQSISGKTAEL* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2272 453 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 3 447 - -
Lja6g2272 453 SUPERFAMILY Pectin lyase-like 32 429 IPR011050 -
Lja6g2272 453 SMART pbh1 181 203 IPR006626 -
Lja6g2272 453 SMART pbh1 265 287 IPR006626 -
Lja6g2272 453 SMART pbh1 204 230 IPR006626 -
Lja6g2272 453 SMART pbh1 293 314 IPR006626 -
Lja6g2272 453 SMART pbh1 231 252 IPR006626 -
Lja6g2272 453 SMART pbh1 322 343 IPR006626 -
Lja6g2272 453 Gene3D - 26 419 IPR012334 -
Lja6g2272 453 PANTHER PECTIN LYASE-RELATED 3 447 - -
Lja6g2272 453 Pfam Glycosyl hydrolases family 28 133 414 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2272 Lja-Chr6 51601898 51604770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2272 1 446 Glycoside Hydrolase AT3G16850 61.298 0.0 565
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2272 - - gmx:100777503 809.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2272 6 51601898 51604770 Lja6g2272 6 51601898 51604770 ECH
Lja4g1321 4 11787993 11791082 Lja6g2272 6 51601898 51604770 PCT