Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1321 ATGCTTGTGGCATTGCTGTTGCTGCTGGCTTTGAGCAATGAAGTCAAGGTGAATGGTGATGTTGGAAGTGTAGCACATTGTGAGATTGCTCATGGACTAAAACCAAGACCACACACTGTCTCCATTTTGGAGTTTGGTGCTGTTGGAGATGGTAAAACACTGAACACTATTGCATTCCAGAATGCTGTCTTCTATCTCAAGTCATTTTCTGACAAGGGTGGAGCTCAGCTCTATGTTCCCCCAGGAAAATGGTTGACTCAAAGTTTCAATCTCACAAGCCATCTTACCCTCTTTTTGGAAAAAGGTGCTGTCATCATTGGATCTCAGGATCCATATCACTCGGAAGTTGTTGATCCGCTGCCTTCGTATGGCCGCGGAATTGAAGTCCCCGGAGGAAGATATCAGAGCTTGATAAATGGATACAAGTTAGAAGATGTTGTCATAACAGGTAATAATGGAACCATTGATGGAATGGGATTGGCTTGGTGGGAATCGTTTAGCTCTCACTCGCTGAACCATAGCCGTCCGCATCTGATTGAATTAGTAGCATCTAGTCATGTGGTAGTTTCAAATCTTACATTCTTGAATGCTCCTGCATATAGCATCCACCCAGTTTATTGCAGCTATGTCCATATTCATAATCTTACAATCTTTGCTCCTCCAGAATCTCCTGATACTGTTGGCTTAGTACCAGATTCGTCCGATCATGTTTGCATAGAGGACTGTGTAATTGCCACAGGCTATGATGCAATTGCTCTCAAAAGTGGCTGGGACGAGTATGGCATAGCCTACGGCCGGCCGACGGAGAATGTACACATTAGAAGGGTGGACCTGCAAGCTTCTTCTGGCTCCGCTCTCGCATTTGGAAGCGACATGTCTGGTGGTATTTCAAATGTTCTTGTGGAGAATGCTCATCTCCACAACTCAAATGGCGGCATCGAGTTTAGAACCACCAGGGGTAGAGGTGGTTATATGAAGGACATCATCATATCAGATGTAGAAATGAAGAATGTTTACACAGCAATTGCTGCAAGAGGCCATTGTGGGTCTCATCCTGATGATAAATTTGACCCCAATGCTCTCCCAGTTTTGGATCACATCATTTTGCAAGATATCACAGGCACAAATATTACCATTGCAGGAAACTTTGCTGGACTTCAAGATTCCCCCTTCACCAACATATGCCTTTCCAACATAACCTTGTCTATGAACTTTGCTTCCTCTATCACTTGGGAATGCTCGAATGTCTCCGGATATTCAGATTCTGTTTTCCCCAAACCCTGTCCTAATCTGGAGAGCCATTCTGATTCTTCCTCATTCTGCCTTTCCATGCTCTCCATGCCGAGTACCGGTAGAGAAACAGCAGTCATGTGA 1374 0.4454 MLVALLLLLALSNEVKVNGDVGSVAHCEIAHGLKPRPHTVSILEFGAVGDGKTLNTIAFQNAVFYLKSFSDKGGAQLYVPPGKWLTQSFNLTSHLTLFLEKGAVIIGSQDPYHSEVVDPLPSYGRGIEVPGGRYQSLINGYKLEDVVITGNNGTIDGMGLAWWESFSSHSLNHSRPHLIELVASSHVVVSNLTFLNAPAYSIHPVYCSYVHIHNLTIFAPPESPDTVGLVPDSSDHVCIEDCVIATGYDAIALKSGWDEYGIAYGRPTENVHIRRVDLQASSGSALAFGSDMSGGISNVLVENAHLHNSNGGIEFRTTRGRGGYMKDIIISDVEMKNVYTAIAARGHCGSHPDDKFDPNALPVLDHIILQDITGTNITIAGNFAGLQDSPFTNICLSNITLSMNFASSITWECSNVSGYSDSVFPKPCPNLESHSDSSSFCLSMLSMPSTGRETAVM* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1321 457 SMART pbh1 234 255 IPR006626 -
Lja4g1321 457 SMART pbh1 296 317 IPR006626 -
Lja4g1321 457 SMART pbh1 184 206 IPR006626 -
Lja4g1321 457 SMART pbh1 268 290 IPR006626 -
Lja4g1321 457 SMART pbh1 325 346 IPR006626 -
Lja4g1321 457 Gene3D - 28 422 IPR012334 -
Lja4g1321 457 SUPERFAMILY Pectin lyase-like 29 431 IPR011050 -
Lja4g1321 457 Pfam Glycosyl hydrolases family 28 136 417 IPR000743 GO:0004650|GO:0005975
Lja4g1321 457 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 2 446 - -
Lja4g1321 457 PANTHER PECTIN LYASE-RELATED 2 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1321 Lja-Chr4 11787993 11791082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1321 3 437 Glycoside Hydrolase AT3G06770 62.785 0.0 565
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1321 - - lja:Lj4g3v2289110.1 910.598
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1321 4 11787993 11791082 Lja4g1321 4 11787993 11791082 ECH
Lja4g1321 4 11787993 11791082 Lja6g2272 6 51601898 51604770 PCT