Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2262 ATGGCCACTGCAAAGAGAGCTGCTGTTCTAATTTTGTGGTTTGCACTGGCATATTGTGTTGATGCTGGTCCAAGAAAAGGGCCACTTGTTGGTCCTGATATCTACAAAGGTAAAAATGTTGCAAAGGATATCCTTGCTCCTGGAGAGAAAATAGTTAATGTCATGAGTTTTGGAGCCAAACCTGATGGCAAATTCGACTGCACTCAGGCTTTCATGGATGCATGGAGAGCAGCATGCAAGTCCAAAGTGCAAGCCAGGCTTCTGATCCCTGTGGGAAGATTTGTGGTTTCTTCAATGTTTTTCGCAGGGCCATGCTTGACTCCAGGGCCCTTAACAGTCCAAGTTGTAGGCACTGTTGTGGCCACAACAGATATCAGTGAATATGAGAATGGAGAATGGCTCATGTTTCAGGAAATCGCTGGCCTAAAAATTATTGGTGGAGGTACTTTTGATGGAAGAGGAAAGGCTTCATGGTCAGAAACTGAGAACTGTGAAACAAACCCAAGCTCCTCATGCGTCAGGGCCCCTAGTAGCCTTTATTTCAGCAGAGTTACCAATGGAATTATACAGAACATCAATTCCTTAGACCCCAAAGGCTTTCACATATTTGTCACTAACTGTGCAAACATTAGACTTAGATTGCTTAAGCTCAATGCTCCAGGTACCAGCCCCAACACTGATGGCATTCACTTGAGCCACTCCACCAATATAAAAATATCGAGAAGTAGCGTTCAAACCGGAGATGATTGTGTCTCCATGATACAAGGAATCAACAATGTTACCATCAATAGACTACAGTGTGGTCCTGGACATGGTATTAGTGTTGGAAGTCTTGGAAAGTACCCGGATGAGCTAGAAGTGAAAGACGTTCGGGTCCAAAACTCGAAATTGTCTGGCACAACAAATGGCCTCAGAATCAAGTCATGGCCAGATAAGTATCCAGGGGCAGCATCAGATATAAGCTTCAGTGGCATTACTATGGAAAATGTTAAAAATCCTATCATCATTGACCAAGAGTACCAATGCTCTCCAAACTGCAATAAGAAGCCTTCACTAGTAAAGATCAGAAATATTCTCTTTTCAAACATAAAGGGAACCACTATTTCACCAATTGCAGTGGATTTAAGGTGTAGCAAGCAGTTCCCATGCCAAAATGTTAAACTTCAGAACATAGACCTGAAGCTTGGAGCCAGCCCTGGTGGCTCTAGATGTGCCAACATTAAACCTCTTTATATCGGCTTGCAACGACCACCGGCATGCCCATAG 1266 0.436 MATAKRAAVLILWFALAYCVDAGPRKGPLVGPDIYKGKNVAKDILAPGEKIVNVMSFGAKPDGKFDCTQAFMDAWRAACKSKVQARLLIPVGRFVVSSMFFAGPCLTPGPLTVQVVGTVVATTDISEYENGEWLMFQEIAGLKIIGGGTFDGRGKASWSETENCETNPSSSCVRAPSSLYFSRVTNGIIQNINSLDPKGFHIFVTNCANIRLRLLKLNAPGTSPNTDGIHLSHSTNIKISRSSVQTGDDCVSMIQGINNVTINRLQCGPGHGISVGSLGKYPDELEVKDVRVQNSKLSGTTNGLRIKSWPDKYPGAASDISFSGITMENVKNPIIIDQEYQCSPNCNKKPSLVKIRNILFSNIKGTTISPIAVDLRCSKQFPCQNVKLQNIDLKLGASPGGSRCANIKPLYIGLQRPPACP* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2262 421 ProSitePatterns Polygalacturonase active site. 264 277 IPR000743 GO:0004650|GO:0005975
Lja6g2262 421 Gene3D - 41 415 IPR012334 -
Lja6g2262 421 SUPERFAMILY Pectin lyase-like 48 420 IPR011050 -
Lja6g2262 421 Pfam Glycosyl hydrolases family 28 79 408 IPR000743 GO:0004650|GO:0005975
Lja6g2262 421 PANTHER - 2 420 - -
Lja6g2262 421 PANTHER POLYGALACTURONASE 2 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2262 Lja-Chr6 51505012 51507370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2262 44 420 Glycoside Hydrolase AT4G18180 44.444 9.25e-109 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2262 K01213 - gmx:106796220 663.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2262 6 51505012 51507370 Lja6g2262 6 51505012 51507370 ECH
Lja4g1309 4 11703382 11706705 Lja6g2262 6 51505012 51507370 PCT