Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1309 ATGTTAAACAATTCTATACCACAATATAAAAAATCAATTTATATTTTTAATTTCATTGTTAATTTTATAAGTCAAGCTTTATTAATATTTCACATAAGTCCTGATATCTTCAAGCGCAGACATGCAAACAAGGATGTGCTTCTTCCTGGGGAGAAAATCTATAACGTCATGAGTTTTGGAGCCAAACCTGATGGTGTCTTTGACTCTACTCAGGCTTTCATGACAGCATGGCAAACTGTGTGCCATTCACCTGCGCCAGGCAGAATATTGGTTCCTGCTGGGAGATTCTTGGTTTCTTCAATGTTTTTTCAAGGGCCATGCCTTTCTCCACATCCAGTAACACTGCAATTTGAAAACGGTGACTGGCTCATGTTCCAGCATATCAATGGCCTCAAAATCTTTGGTGGGGGTACTTTTGATGGACAGGGTCAGAGCTCATGGCAAATCACTGAGAATTGTGAAGCAAACAATGATGACTCATGCATCAGAAACCCCAGCAGTCTTTTCTTCATGGATTGCAGCAATGTCATGGTACAGAACATTAAATCACTGAATCCCAAAGGGTTTCACATGTTCGTTACTAAATGTACAAATGTCAGATTACGCAAACTTAAGCTTATTGCACCTGAGACCAGCCCCAACACTGATGGCATTCATATCAGCAGCTCCATCAATGTGATTATAGCCAGAAACACCATTCAAACTGGAGATGATTGTATCTCTATGATTCAGGGATCTGAAAATGTTTTCATCAACAGGCTTAAGTGTGGCCCTGGGCATGGTATCAGTATTGGTAGCCTTGGAAAGTATGCGGAGGAGCGAGAGGTGAAAGGCATTCGTATCAAGAACAGCGCGTTGATTGGCACAACAAATGGGCTCAGAATCAAATCATGGCCAGACAAATATGGAGGTGCAGCATCAGAGATCAGCTTCAGTAACATTACCATGGAAAATGTTAAAAATCCCATCATCATTGACCAGGAGTACCAATGCTCTCCAAACTGCCAGAAGAAGCCATCATTGGTGAGGATTAGGGATATTCACTTTGCAAATGTTAAGGGAACTACAACTTCACCAATTGCAGTGGACTTCAGATGCAGTAAGCTGTACCCATGCATGGGAATTACACTCAGAGACATTGACCTGAAGCTTGGAACTGCTCCTACAACCGCTAGATGTTCCAATATTAAGCCTGTCTATGGCTTAGGGGTGGTGAATCCACCACCTTGCATATAA 1236 0.4175 MLNNSIPQYKKSIYIFNFIVNFISQALLIFHISPDIFKRRHANKDVLLPGEKIYNVMSFGAKPDGVFDSTQAFMTAWQTVCHSPAPGRILVPAGRFLVSSMFFQGPCLSPHPVTLQFENGDWLMFQHINGLKIFGGGTFDGQGQSSWQITENCEANNDDSCIRNPSSLFFMDCSNVMVQNIKSLNPKGFHMFVTKCTNVRLRKLKLIAPETSPNTDGIHISSSINVIIARNTIQTGDDCISMIQGSENVFINRLKCGPGHGISIGSLGKYAEEREVKGIRIKNSALIGTTNGLRIKSWPDKYGGAASEISFSNITMENVKNPIIIDQEYQCSPNCQKKPSLVRIRDIHFANVKGTTTSPIAVDFRCSKLYPCMGITLRDIDLKLGTAPTTARCSNIKPVYGLGVVNPPPCI* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1309 411 PANTHER - 42 406 - -
Lja4g1309 411 SMART pbh1 306 327 IPR006626 -
Lja4g1309 411 SMART pbh1 276 297 IPR006626 -
Lja4g1309 411 SMART pbh1 223 244 IPR006626 -
Lja4g1309 411 SMART pbh1 196 222 IPR006626 -
Lja4g1309 411 ProSitePatterns Polygalacturonase active site. 253 266 IPR000743 GO:0004650|GO:0005975
Lja4g1309 411 SUPERFAMILY Pectin lyase-like 49 410 IPR011050 -
Lja4g1309 411 Pfam Glycosyl hydrolases family 28 81 397 IPR000743 GO:0004650|GO:0005975
Lja4g1309 411 Gene3D - 48 402 IPR012334 -
Lja4g1309 411 PANTHER POLYGALACTURONASE 42 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1309 Lja-Chr4 11703382 11706705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1309 54 395 Glycoside Hydrolase AT2G43870 41.573 8.74e-95 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1309 K01213 - gmx:100800324 540.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1309 4 11703382 11706705 Lja4g1309 4 11703382 11706705 ECH
Lja4g1309 4 11703382 11706705 Lja6g2262 6 51505012 51507370 PCT