Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2218 ATGAGTCAGGAATCGTTCATATACAGCTTCGTGGCTCGTGGGACGATGGTGCTAGCTGAGTACACCGAGTTCACTGGGAACTTCCCTGCCATTGCAGCTCAGTGTCTCCAGAAACTAACCTCTTCCAACAACAAGTTCACCTACAACTGTGACCACCACACCTTCAATTTCTTGGTGGAAGATGGTTATGCTTACTGTGTTGTTGCGAAGGAATCTGTTAGCAAGCAAATCTCTATTGCTTTCCTTGAACGGGTCAAAGCTGACTTTAAGAAAAGATATGGTGGTGGAAAAGCTGATACAGCTGTTGCCAAAAGTCTGAACAAGGAGTTTGGACCAGTTATGAAAGAGCACATGAAATATATCATTGATCATGCTGAAGAGATCGAAAAGCTGATAAAAGTGAAGGCTCAAGTTTCAGAAGTTAAAAGTATCATGTTAGAGAATATAGACAAGGCTATTGACAGGGGAGAAAATATGACTATTCTAGCAGACAAGACAGAGACATTGCGCTCACAGGCTCAAGATTTCAGAAAGCAAGGGACACAAGTTCGTCGGAAGATGTGGTATCAGAACATGAAAATTAAATTGGTTGTCTTTGGAATTTTGTTGTTTTTGGTCCTGGTTATCTGGCTTTCTATATGTGGTGGATTTGACTGTTCAAACTAG 666 0.4144 MSQESFIYSFVARGTMVLAEYTEFTGNFPAIAAQCLQKLTSSNNKFTYNCDHHTFNFLVEDGYAYCVVAKESVSKQISIAFLERVKADFKKRYGGGKADTAVAKSLNKEFGPVMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAIDRGENMTILADKTETLRSQAQDFRKQGTQVRRKMWYQNMKIKLVVFGILLFLVLVIWLSICGGFDCSN* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2218 221 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN 724 1 220 - -
Lja6g2218 221 Pfam Regulated-SNARE-like domain 32 110 IPR010908 -
Lja6g2218 221 Pfam Synaptobrevin 129 215 IPR042855 -
Lja6g2218 221 Gene3D Longin domain 6 116 - -
Lja6g2218 221 CDD R-SNARE 129 188 - -
Lja6g2218 221 ProSitePatterns Synaptobrevin signature. 148 167 IPR001388 GO:0016021|GO:0016192
Lja6g2218 221 SUPERFAMILY SNARE-like 6 121 IPR011012 -
Lja6g2218 221 SUPERFAMILY SNARE fusion complex 126 192 - -
Lja6g2218 221 PRINTS Synaptobrevin signature 135 154 IPR001388 GO:0016021|GO:0016192
Lja6g2218 221 PRINTS Synaptobrevin signature 155 174 IPR001388 GO:0016021|GO:0016192
Lja6g2218 221 PRINTS Synaptobrevin signature 191 210 IPR001388 GO:0016021|GO:0016192
Lja6g2218 221 ProSiteProfiles Longin domain profile. 10 114 IPR010908 -
Lja6g2218 221 SMART Longin_2 31 113 IPR010908 -
Lja6g2218 221 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 130 190 IPR042855 -
Lja6g2218 221 CDD Longin 7 120 IPR010908 -
Lja6g2218 221 PANTHER SNARE PROTEINS 1 220 - -
Lja6g2218 221 Gene3D - 117 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2218 Lja-Chr6 51136035 51138667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2218 1 220 Miscellaneous Gene Families AT1G04760 68.636 3.36e-112 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2218 K08511 - gmx:100527252 427.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2218 6 51136035 51138667 Lja6g2218 6 51136035 51138667 ECH
Lja4g1275 4 11372176 11375625 Lja6g2218 6 51136035 51138667 PCT