Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1275 ATGAGTCAGGAATCGTTCATATACAGCTTCGTGGCTCGGGGGACGATGGTGTTAGCTGAGTACACAGAGTTCACTGGAAACTTCCCTGCGATTGCATCTCAGTGTCTCCAGAAGCTAACTTCCTCCAACAACAAGTTCACCTACAATTGTGACCACCACACCTTCAATTTCCTTGTTGAAGATGGTTATGCTTACTGTGTTGTTGCCAAGGAATCTGTTAGCAAGCAGATCTCTATTGCTTTCTTGGAACGTGTCAAAGCAGACTTTAAGAAAAGATATGGTGGTGGAAAAGCTGATACAGCTGTTGCCAAAAGTCTCAACAAGGAGTTTGGACCAGTTATGAAAGAGCACATGAAGTATATCATCGACCATGCCGAAGAGATTGAGAAGCTAATAAAAGTGAAGGCTCAAGTTTCAGAAGTTAAAAGCATTATGCTAGAGAACATTGACAAGGCTATTGATAGAGGAGAAAATATAACTATTCTTGCAGACAAGACAGAGACATTGCACTCTCAGGCCCAGGAGTTCAGAAATAAAGGAACAAAAATCCGTCGGAAGATGTGGTATCAGAACATGAAAATAAAATTAGTTGTTCTTGGAATTTTGTTGTTTTTAGTCCTGGTTATATGGCTTTCTGTTTGCCATGGATTCAAATGCTAA 660 0.4045 MSQESFIYSFVARGTMVLAEYTEFTGNFPAIASQCLQKLTSSNNKFTYNCDHHTFNFLVEDGYAYCVVAKESVSKQISIAFLERVKADFKKRYGGGKADTAVAKSLNKEFGPVMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAIDRGENITILADKTETLHSQAQEFRNKGTKIRRKMWYQNMKIKLVVLGILLFLVLVIWLSVCHGFKC* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1275 219 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN 724 1 219 - -
Lja4g1275 219 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 130 190 IPR042855 -
Lja4g1275 219 Gene3D - 126 195 - -
Lja4g1275 219 CDD R-SNARE 129 188 - -
Lja4g1275 219 SUPERFAMILY SNARE fusion complex 126 192 - -
Lja4g1275 219 ProSitePatterns Synaptobrevin signature. 148 167 IPR001388 GO:0016021|GO:0016192
Lja4g1275 219 Gene3D Longin domain 1 125 - -
Lja4g1275 219 SUPERFAMILY SNARE-like 6 121 IPR011012 -
Lja4g1275 219 Pfam Synaptobrevin 129 215 IPR042855 -
Lja4g1275 219 Pfam Regulated-SNARE-like domain 32 110 IPR010908 -
Lja4g1275 219 PRINTS Synaptobrevin signature 191 210 IPR001388 GO:0016021|GO:0016192
Lja4g1275 219 PRINTS Synaptobrevin signature 135 154 IPR001388 GO:0016021|GO:0016192
Lja4g1275 219 PRINTS Synaptobrevin signature 155 174 IPR001388 GO:0016021|GO:0016192
Lja4g1275 219 CDD Longin 7 120 IPR010908 -
Lja4g1275 219 ProSiteProfiles Longin domain profile. 10 114 IPR010908 -
Lja4g1275 219 SMART Longin_2 31 113 IPR010908 -
Lja4g1275 219 PANTHER SNARE PROTEINS 1 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1275 Lja-Chr4 11372176 11375625 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1275 1 219 Miscellaneous Gene Families AT1G04760 68.950 2.58e-112 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1275 K08511 - gmx:100781950 401.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1275 4 11372176 11375625 Lja6g2218 6 51136035 51138667 PCT