Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2214 ATGGAGAAGGAGGAGCCCAGCCAGATGAAGCGTGCCATGATTGATTCTTCTGCTGGGGCTATTTCTGGTGGGATATCAAGGACAGTTACCTCTCCTCTTGATGTTATTAAGATTAGGTTCCAGGTTCAGCTAGAGCCCACATCTTCGTGGGCGTTACTACGCAAGGATTTGTCTAAACCTTCAAAATATACTGGCATGCTTCAAGCAACCAAAGACATTTTTAGAGAAGAAGGCATTCGGGGTTTTTGGCGGGGTAATGTGCCGGCTTTGCTCATGGTTATGCCATATACAGCTATACAATTTACTGTTTTACACAAGTTAAAGACTTTTGCCTCTGGTTCTTCAAAGACAGAGAATCATATTAATTTGAGCCCTTACCTATCCTACATAAGTGGGGCATTAGCTGGGTGTGCAGCTACTGTGGGGTCATATCCCTTTGATCTTCTTCGAACCATATTAGCTTCTCAGGGTGAGCCAAAGGTTTATCCAAACATGAGGTCAGCTTCCATTGACATTTTCCGGACTCGTGGCTTCCCAGGCTTGTATGCTGGATTGACACCGACACTAATTGAGATTATACCTTATGCGGGCCTACAATTCGGCACCTATGATACATTCAAACGTTGGGCCATGGTGTGGAACCATCGCCACTATTCAAATGCTACTGCTGATGATAGCCTCTCTAGCTTTCAGCTTTTCCTTTGTGGGTTGGCAGCAGGAACATGTGCCAAGCTTGTATGTCATCCGCTGGACGTAGTCAAGAAAAGATTTCAGATTGAAGGTCTACAAAGGCATCCAAGATATGGAGCTCGGGTTGAACATCGTGCATACAAAAACATGTTTGATGCGATGAAACGGATAATACAGATGGAGGGTTGGGCTGGTTTATATAAGGGTTTATTCCCATCAACTGTAAAAGCTGCACCAGCTGGTGCTGTAACATTTGTTGCATATGAATTGACGTCAGATTGGTTGGAGTCTGTTTGGACTTGA 993 0.4441 MEKEEPSQMKRAMIDSSAGAISGGISRTVTSPLDVIKIRFQVQLEPTSSWALLRKDLSKPSKYTGMLQATKDIFREEGIRGFWRGNVPALLMVMPYTAIQFTVLHKLKTFASGSSKTENHINLSPYLSYISGALAGCAATVGSYPFDLLRTILASQGEPKVYPNMRSASIDIFRTRGFPGLYAGLTPTLIEIIPYAGLQFGTYDTFKRWAMVWNHRHYSNATADDSLSSFQLFLCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPRYGARVEHRAYKNMFDAMKRIIQMEGWAGLYKGLFPSTVKAAPAGAVTFVAYELTSDWLESVWT* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2214 330 Pfam Mitochondrial carrier protein 15 111 IPR018108 -
Lja6g2214 330 Pfam Mitochondrial carrier protein 227 325 IPR018108 -
Lja6g2214 330 Pfam Mitochondrial carrier protein 124 210 IPR018108 -
Lja6g2214 330 ProSiteProfiles Solute carrier (Solcar) repeat profile. 227 324 IPR018108 -
Lja6g2214 330 ProSiteProfiles Solute carrier (Solcar) repeat profile. 123 209 IPR018108 -
Lja6g2214 330 PRINTS Mitochondrial carrier protein signature 85 105 IPR002067 GO:0055085
Lja6g2214 330 PRINTS Mitochondrial carrier protein signature 236 258 IPR002067 GO:0055085
Lja6g2214 330 PRINTS Mitochondrial carrier protein signature 28 42 IPR002067 GO:0055085
Lja6g2214 330 PRINTS Mitochondrial carrier protein signature 15 28 IPR002067 GO:0055085
Lja6g2214 330 PRINTS Mitochondrial carrier protein signature 138 156 IPR002067 GO:0055085
Lja6g2214 330 PRINTS Mitochondrial carrier protein signature 182 200 IPR002067 GO:0055085
Lja6g2214 330 ProSiteProfiles Solute carrier (Solcar) repeat profile. 10 110 IPR018108 -
Lja6g2214 330 Gene3D Mitochondrial carrier domain 7 327 IPR023395 -
Lja6g2214 330 PANTHER MITOCHONDRIAL CARRIER PROTEIN-RELATED 5 328 - -
Lja6g2214 330 SUPERFAMILY Mitochondrial carrier 9 319 IPR023395 -
Lja6g2214 330 PANTHER SOLUTE CARRIER FAMILY 25 5 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2214 Lja-Chr6 51101835 51105553 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2214 2 330 Organic Solute Cotransporters AT3G21390 75.075 0.0 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2214 K15108 - gmx:100803750 597.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2214 6 51101835 51105553 Lja6g2214 6 51101835 51105553 ECH
Lja4g1272 4 11331256 11334656 Lja6g2214 6 51101835 51105553 PCT