Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1272 ATGGTGTTTGTGGCAATGGAGGAGCCGAGCCAGCTGAAGCGTGCCATGATTGATTCCTCAGCTGGAGCAATTTCTGGTGGAATATCTCGAACTGTAACATCTCCCCTTGATGTTATTAAGATTAGATTCCAGGTTCAACTGGAGCCAACTTCTTCATGGGCTTTGCTAAGGAGGAATTTGGCTGCAACTGCTCCATCCAAATATACTGGCATGTTTCAAGCAAGTAAAGATATTCTAAGAGAAGAAGGTGTACAGGGCTTTTGGCGGGGAAATGTGCCTGCACTGCTCATGGTTATGCCATATACAGCTATACAGTTTACAGTTTTACATAAGTTGAAGACTTTTGCCTCTGGTTCTTCCAAGACAGAGAATCACATTGGTTTGAGCCCTTATCTATCCTATGTCAGTGGGGCATTAGCTGGCTGTGCAGCTACTCTAGGTTCATATCCCTTTGATCTTCTCAGAACCATATTAGCTTCTCAGGGTGAGCCAAAGGTGTATCCAAACATGAGGTCAGCATTTGTGGATATCATCCAGACTCGAGGATTTCAAGGCATGTATGCTGGATTATCGCCAACTCTAGTTGAAATTATACCTTATGCTGGCCTACAATTCGGCACCTATGATACATTCAAGCGTTGGGCCATGGCTTGGAACCATTATAGGTATTCCAACACCTCTGCAGAAAATAGTCCCTCCAGCTTTCAGCTTTTCCTCTGTGGGTTGGCGGCTGGAACATGTGCCAAACTTGTCTGTCATCCACTTGATGTTGTCAAGAAAAGATTTCAGATCGAAGGGCTTCAAAGGCATCCTAGATACGGTGCTCGAGTTGAGCGTCGGGCGTACAGTAGTATGTTCGACGCTATACAAAGGATTTTACGGTTGGAAGGTTGGGCTGGTCTGTACAAAGGGATAATCCCATCTACTGTTAAAGCTGCACCAGCCGGTGCTGTGACATTTGTTGCATATGAATTGACATCAGATTGGCTAGAGTCCCTTGTGACCTAG 1008 0.4524 MVFVAMEEPSQLKRAMIDSSAGAISGGISRTVTSPLDVIKIRFQVQLEPTSSWALLRRNLAATAPSKYTGMFQASKDILREEGVQGFWRGNVPALLMVMPYTAIQFTVLHKLKTFASGSSKTENHIGLSPYLSYVSGALAGCAATLGSYPFDLLRTILASQGEPKVYPNMRSAFVDIIQTRGFQGMYAGLSPTLVEIIPYAGLQFGTYDTFKRWAMAWNHYRYSNTSAENSPSSFQLFLCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPRYGARVERRAYSSMFDAIQRILRLEGWAGLYKGIIPSTVKAAPAGAVTFVAYELTSDWLESLVT* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1272 335 Gene3D Mitochondrial carrier domain 10 332 IPR023395 -
Lja4g1272 335 ProSiteProfiles Solute carrier (Solcar) repeat profile. 232 329 IPR018108 -
Lja4g1272 335 ProSiteProfiles Solute carrier (Solcar) repeat profile. 13 115 IPR018108 -
Lja4g1272 335 PANTHER MITOCHONDRIAL CARRIER PROTEIN-RELATED 8 333 - -
Lja4g1272 335 ProSiteProfiles Solute carrier (Solcar) repeat profile. 128 214 IPR018108 -
Lja4g1272 335 Pfam Mitochondrial carrier protein 233 330 IPR018108 -
Lja4g1272 335 Pfam Mitochondrial carrier protein 130 215 IPR018108 -
Lja4g1272 335 Pfam Mitochondrial carrier protein 19 116 IPR018108 -
Lja4g1272 335 PANTHER SOLUTE CARRIER FAMILY 25 8 333 - -
Lja4g1272 335 PRINTS Mitochondrial carrier protein signature 187 205 IPR002067 GO:0055085
Lja4g1272 335 PRINTS Mitochondrial carrier protein signature 18 31 IPR002067 GO:0055085
Lja4g1272 335 PRINTS Mitochondrial carrier protein signature 31 45 IPR002067 GO:0055085
Lja4g1272 335 PRINTS Mitochondrial carrier protein signature 241 263 IPR002067 GO:0055085
Lja4g1272 335 PRINTS Mitochondrial carrier protein signature 143 161 IPR002067 GO:0055085
Lja4g1272 335 PRINTS Mitochondrial carrier protein signature 90 110 IPR002067 GO:0055085
Lja4g1272 335 SUPERFAMILY Mitochondrial carrier 14 324 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1272 Lja-Chr4 11331256 11334656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1272 6 335 Organic Solute Cotransporters AT3G21390 73.952 0.0 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1272 K15108 - gmx:100784986 596.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1272 4 11331256 11334656 Lja6g2214 6 51101835 51105553 PCT