Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2206 ATGTCTATGAGTGAGCGCAAGACTATTGACCTAGAACAAGGATGGGACTTTATGCAAAAGGGAATTACAAAGCTGAAGAACATTCTAGAAGGGTTGCCCGAGCCGCAGTTCAGCTCCGAGGACTACATGATGCTCTATACGACCATATATAATATGTGCACTCAAAAGCCTCCTCATGACTATTCGCAACAGCTGTATGACAAGTATAGGGAATCATTTGAAGAGTACATCATTTCAACAGTGTTACCTGCTTTGAGAGAGAAGCATGATGAATTTATGTTAAGAGAACTTGTGCAGAGGTGGGCAAACCATAAAGTTATGGTTAGGTGGCTTTCTCGTTTCTTTCACTATTTGGATCGCTACTTTATTGCCCGGAGATCACTTCCCCCGCTTAATGAAGTGGGGCTGACTTGCTTCCGTGATTTGGTTTACAAGGAACTAAATGGGAAAGTGAGAGATGCAGTAATTTCTCTTATTGATCAAGAACGTGAAGGAGAGCAAATTGATCGAGCTCTATTGAAAAATGTATTAGATATTTTTGTTGAAATTGGAATGGGGCAAATGGATCACTATGAGAATGATTTTGAAGCTGCCCTGCTCAAGGACACTTCTGCCTATTATTCTCGAAAGGCTTCAAACTGGATCCTAGAAGATTCTTGTCCTGATTATATGCTCAAGGCTGAGGAGTGCTTAAAACGGGAGAAAGATAGAGTTGGTCATTACTTGCACTCCAGCAGTGAGCCGAAGTTATTAGAGAAAGTTCAACATGAGCTTCTATCTGTGTATGCAAACCAACTCCTTGAAAAAGAGCATTCCGGATGTCATGCATTACTGAGAGATGATAAGGTTGAAGACTTGTCAAGGATGTTCAGACTCTTTTCTAAAATACCTCGAGGCTTGGATCCTGTTTCCAGTATATTTAAGCAGCATGTTACCGATGAAGGTACAGCCTTGGTGAAGTTAGCTGAAGATGCAGCAAGTAACAAGAAGGCAGAGAAAAAGGACATTATTGGTTTGCAGGAGCAGGTTTTTGTTCGGAAGGTGATTGAGCTGCATGACAAGTACCTGGCATATGTGAACGATTGTTTCCAAAATCATACTCTTTTCCACAAGGCTCTCAAGGAAGCTTTTGAGATCTTTTGCAACAAGGGTGTTGCTGGAAGCTCAAGTGCAGAACTTCTTGCTACTTTCTGTGATAATATTCTTAAGAAAGGAGGAAGTGAAAAATTGAGTGATGAAGCAATTGAAGAAACTCTTGAAAAGGTTGTCAAGTTGCTTGCCTATATTAGCGACAAAGATTTGTTTGCTGAATTTTATAGGAAAAAGCTTGCTCGAAGGCTTCTTTTTGATAAGAGTGCCAACGATGACCATGAGAGAAGTATTTTGACAAAATTGAAGCAACAATGTGGTGGCCAATTTACGTCAAAGATGGAAGGAATGGTTACGGATTTGACACTTGCAAAGGAGAACCAAGCAAGCTTTGAGGAATATTTAAGTAATAATGCTCTTGCAGACCCTGGACTTGACTTGACAGTTACAGTTCTGACTACTGGTTTCTGGCCTAGTTACAAATCTTTTGACCTTAATCTTCCTGCAGAAATGGTTAGATGTGTTGAAGTTTTCAAGGAGTTTTATCAAACAAAAACTAAGCACAGAAAGCTTACTTGGATCTATTCCTTGGGTACCTGCAATATAAGCGGAAAATTTGAACCAAAAACTATGGAGCTGATTGTGACGACTTACCAGGCTTCAGCATTGCTTCTTTTTAATTCCTCAGATAGACTGAGTTATTCGGACATAATGACTCAGTTAAACTTATCTGATGAGGATGTTATTAGACTTCTCCATTCCTTGTCATGTGCCAAGTACAAGATCCTTAACAAGGAACCAAGCACAAAAACAATATCTCCTACTGATTATTTTGAATTTAATTCAAAATTCACAGACAAAATGAGGAGGATCAAGATTCCTCTTCCTCCTGTGGATGAGAAGAAAAAAGTAATTGAGGATGTTGACAAAGACAGAAGATATGCTATTGATGCCTCAATTGTGCGTATAATGAAGAGTCGGAAAGTTTTAAGTTACCAACAGTTAGTTATGGAGTGTGTTGAACAGTTAGGTCGCATGTTTAAGCCTGATGTCAAGGCAATTAAGAAGCGTATTGAAGATTTGATCTCTCGAGACTACTTGGAAAGAGACAAAGATAATGCAAATTTGTTCAAGATCATATTTGAACATACAAAATATTGGTTCCTCTTGATAATTTCCTTGAAGGGAGGAACTGCAGAATTGTGTAACTCTCTAGTTTCAGTGAAATTGTATTTTGATTGTCATCTTATAAACCAAATGAATGGCTGTGTCATTTGA 2367 0.3883 MSMSERKTIDLEQGWDFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYIISTVLPALREKHDEFMLRELVQRWANHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYKELNGKVRDAVISLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDHYENDFEAALLKDTSAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVGHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSSIFKQHVTDEGTALVKLAEDAASNKKAEKKDIIGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKALKEAFEIFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLAKENQASFEEYLSNNALADPGLDLTVTVLTTGFWPSYKSFDLNLPAEMVRCVEVFKEFYQTKTKHRKLTWIYSLGTCNISGKFEPKTMELIVTTYQASALLLFNSSDRLSYSDIMTQLNLSDEDVIRLLHSLSCAKYKILNKEPSTKTISPTDYFEFNSKFTDKMRRIKIPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLSYQQLVMECVEQLGRMFKPDVKAIKKRIEDLISRDYLERDKDNANLFKIIFEHTKYWFLLIISLKGGTAELCNSLVSVKLYFDCHLINQMNGCVI* 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2206 788 ProSiteProfiles Cullin family profile. 389 619 IPR016158 -
Lja6g2206 788 SMART cul_2 420 569 IPR016158 -
Lja6g2206 788 Pfam Cullin protein neddylation domain 674 736 IPR019559 -
Lja6g2206 788 SUPERFAMILY "Winged helix" DNA-binding domain 659 740 IPR036390 -
Lja6g2206 788 SUPERFAMILY Cullin repeat-like 11 384 IPR016159 -
Lja6g2206 788 SUPERFAMILY Cullin homology domain 388 657 IPR036317 -
Lja6g2206 788 Gene3D Cullin; Chain C, Domain 2 507 660 - -
Lja6g2206 788 Pfam Cullin family 24 647 IPR001373 GO:0006511|GO:0031625
Lja6g2206 788 Gene3D Cullin Repeats 142 264 - -
Lja6g2206 788 Gene3D Cullin Repeats 267 389 - -
Lja6g2206 788 SMART Cullin_Nedd8_2 671 738 IPR019559 -
Lja6g2206 788 Coils Coil 322 342 - -
Lja6g2206 788 Gene3D Cullin Repeats 3 141 - -
Lja6g2206 788 Gene3D - 661 740 IPR036388 -
Lja6g2206 788 PANTHER CULLIN 2 743 IPR045093 -
Lja6g2206 788 Gene3D Cullin Repeats 390 504 - -
Lja6g2206 788 PANTHER CULLIN 3B 2 743 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2206 Lja-Chr6 51043573 51052131 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2206 K03347 - gmx:100784626 1426.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2206 6 51043573 51052131 Lja6g2206 6 51043573 51052131 ECH
Lja4g1263 4 11167954 11170590 Lja6g2206 6 51043573 51052131 PCT