Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2122 ATGGCAACTGAAAGTCCAATTAGAATCTCAGAAGCTGGGGGTAAGTGGCCGTCTCATAAGGAAGCTGCAACTTTTGGTCAACCATCTCATAACATGGTGACTGAGGATTTGGGTATACTTTTGAAGGGCCATAGGTTCCATGGCAGGGGACACGATGTTGCACCCAATCGCAGTGGCAGTGCACCTCCCAGCATGGAAGGTTCATTTCTGGCCATAGAAAACCTATTACACCAGCAAAACACCACCGAGAATACAAGTTTGACAACGCTAAGCAGAGCTGTGCAAAATTGTGAGTCTGAAGAACAATTACGAGCCAGTCCAGCTTATTTGGCATATTACAGTTCCAATGTCAACCTAAACCCTAGACTTCCTCCCCCGCTTACATCCTGGGAAAATCGCCATCTAGGGCATCATATTGGTAGTTTTAGAGATAATGGGAGGTTTTCTTCTGATCATGGCAGTAAAAGTTCTCTTTCAACACACAAGGAAGAACCCGAGGATGATTCACCCAAACGGCCATATGAAAGTGAATTAGTTAAAACAACTGGAGTATGGCATAGACCAGGTGCAGCTTCATTGACATCACAGCACAAAAATGCAGTTGATCTAATTCAGGAAGATTTTCCTCGCACCATGTCACCTGTATATAACAAGTCTCCTTCTGCAAGTCATGGACTGGTGGATAAATCAGTTGACTCAGAAGCCGGTTCTAGCTCTTCTCATGAGGCCTCTAATAGTGCTGTAGATTCTGCCCAACCTACAGCAGATGAAGGTGATATAAGGTTGTCATCAAGTTTTGATACCCATGCCCCAGTCGCAAGCTCATCATCACTTGAATCTACAGCCAGCATGGGTTTTAGTGACTTGAATGTTGCTACTATTGAGTCTCAACTAAAGGCTCTTAGTGTATCTAATCTACCAAATCCAGAAAGCCTGAGTTATGAAGAAAAATGGAAGACCATCTACCAGAACAATTTGATGCAACGCCAGGTATTCCCGCAACAAAACAATCCATATGAAGTTCCTAGTGCCAATTCTCAAAGTGTAAACTCTGCCTACGTTGTTAGGGAACAGTTTCCTCAAAATTCAGGCAAGTTCCCAGATGTCCAACCACTACTGCAGTCATCTGGGTTTACACCTCCCCTATATGCCACAGCAGCAGCTTATATGACCTCAGCAAATCCATTTTATACTAATATGCAGGCCCCAGGCATATATACTCCACAATATGTTGGAGGGTACACTTTAAATCCTACAGCTATTCCTCAGTATATTACTGCATACCCTCCTCATGGTGCTGTGCCACTTGTTGATGGGGCCTCTAGTTCCAGATACACCCCATTAACACCAGGGGTTTCAACTGGTGGAAGCATTTCACATGGAGCTGAAATGGTACATGCAAACAAGTACCTTGGGCAATTTGGATATCCTATGCAGCCTTCTTTTGGTGATCCTTATTACATGCAGTATCATCAGCAACCTTTAATGGAGGGATATGGTATTTCTGGTCATTTTGACCCACTGGCACCTAGAGCAAGTGATGCTAGCCAAACTAGTCCGTATGATTCTCAAAAAAGGCCTAGTACTGGTGCTTATTTAGATGATAAAAGAATACTTGATCAAAGAACTGGTGCTAATATTAACTCAAGAAAAGGTGGATCATTGACTCCTAGTTATTTTGGGCATATGCCAAACATGGGTTTTGTAATGCAGTATCCAAATTCCCCACTTCCTAGTCCAGCTTTCTCGGGATATCCAGAAGGAACTCTTGGCCTTCCAGGAGGTAGAAATGAAATGAAACTTTCCCCAGCTTCTGGTAGAAATGGAGGCATATTATCTGGATGGCAAGGTCAGAGGTCCTTTGACAGTGCTCATGACCCCAAAATTGTTAATTTTCTTGAAGAGTTAAAATCTGGCAAAGGTCGTAGATTTGAGCTATCTGATATTATTGGACATATTGTTGAATTTAGCGCTGATCAGCATGGGAGTCGATTTATACAGCAGAAGTTGGAAACTTGTGGTGTTGAAGACAAGGCATTGGTGTTCAAAGAGGTTCTCCCACGTGCTTCTAAACTAATGACTGATGTATTTGGTAACTACGTAATACAGAAGTTTTTTGAGTATGGAAGCCCTGAGCAGAGGAGGGAACTTGCAGATCAACTGGCTGGTCAGATACTGCCTTTAAGTCTGCAGATGTATGGCTGTCGTGTGATCCAAAAGGCACTTGAGGTTATTGATCATGATCAGAAAGCTCAGCTTGTTCGTGAGCTAGATGGAAATGTTATGAGATGTGTTCGTGACCAGAATGGGAACCATGTAATACAAAAGTGCATTGAATCTATTCCAACAAAAAAAATTGGCTTTATTCTATCTGCATTCCATGGTCAAGTTGCTAATCTATCAATGCATCCTTATGGTTGCCGAGTCATACAGAGAGTTCTAGAGCATTGTACAGATGAGGTTCAGTGTCAGTTTATTGTGGATGAAATCTTGGAATCAGTTTGTGCTCTTGCTCAGGACCAGTATGGTAATTATGTTACCCAGCATGTGTTGGAGAGAGGAAAGCCTCAAGAAAGGAGCCAAATTATTGGCAAGCTGTCAGGACATATTGTTCAATTAAGCCAGCATAAGTTTGCTTCGAATGTTGTCGAGAAGTGCTTGGTGTATGGTGATGTCCCAGAGCGGGAATCGTTGATTGCAGAGATTATTGGACAGGATGAGCAAAATAATAATTTATTGACAATGATGAAAGACCAATTTGCGAACTATGTGGTCCAGAAAGTTATTGATCTCTGTTCAGAAAATCAACGAGCAACGTTGCTTTCTCACATAAGAGTTCATGCTCAGGCTTTGAAGAAATACACTTATGGAAAACACATCGTGGCTCGGTTGGAACAGCAATTTGAAGAGGATCAATCACCCAGTTCATGA 2931 0.4234 MATESPIRISEAGGKWPSHKEAATFGQPSHNMVTEDLGILLKGHRFHGRGHDVAPNRSGSAPPSMEGSFLAIENLLHQQNTTENTSLTTLSRAVQNCESEEQLRASPAYLAYYSSNVNLNPRLPPPLTSWENRHLGHHIGSFRDNGRFSSDHGSKSSLSTHKEEPEDDSPKRPYESELVKTTGVWHRPGAASLTSQHKNAVDLIQEDFPRTMSPVYNKSPSASHGLVDKSVDSEAGSSSSHEASNSAVDSAQPTADEGDIRLSSSFDTHAPVASSSSLESTASMGFSDLNVATIESQLKALSVSNLPNPESLSYEEKWKTIYQNNLMQRQVFPQQNNPYEVPSANSQSVNSAYVVREQFPQNSGKFPDVQPLLQSSGFTPPLYATAAAYMTSANPFYTNMQAPGIYTPQYVGGYTLNPTAIPQYITAYPPHGAVPLVDGASSSRYTPLTPGVSTGGSISHGAEMVHANKYLGQFGYPMQPSFGDPYYMQYHQQPLMEGYGISGHFDPLAPRASDASQTSPYDSQKRPSTGAYLDDKRILDQRTGANINSRKGGSLTPSYFGHMPNMGFVMQYPNSPLPSPAFSGYPEGTLGLPGGRNEMKLSPASGRNGGILSGWQGQRSFDSAHDPKIVNFLEELKSGKGRRFELSDIIGHIVEFSADQHGSRFIQQKLETCGVEDKALVFKEVLPRASKLMTDVFGNYVIQKFFEYGSPEQRRELADQLAGQILPLSLQMYGCRVIQKALEVIDHDQKAQLVRELDGNVMRCVRDQNGNHVIQKCIESIPTKKIGFILSAFHGQVANLSMHPYGCRVIQRVLEHCTDEVQCQFIVDEILESVCALAQDQYGNYVTQHVLERGKPQERSQIIGKLSGHIVQLSQHKFASNVVEKCLVYGDVPERESLIAEIIGQDEQNNNLLTMMKDQFANYVVQKVIDLCSENQRATLLSHIRVHAQALKKYTYGKHIVARLEQQFEEDQSPSS* 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2122 976 MobiDBLite consensus disorder prediction 212 262 - -
Lja6g2122 976 ProSiteProfiles Pumilio RNA-binding repeat profile. 829 864 IPR001313 GO:0003723
Lja6g2122 976 ProSiteProfiles Pumilio RNA-binding repeat profile. 792 828 IPR001313 GO:0003723
Lja6g2122 976 PANTHER PUMILIO HOMOLOG 5 45 969 - -
Lja6g2122 976 ProSiteProfiles Pumilio RNA-binding repeat profile. 865 900 IPR001313 GO:0003723
Lja6g2122 976 MobiDBLite consensus disorder prediction 1 25 - -
Lja6g2122 976 Gene3D - 629 973 IPR011989 -
Lja6g2122 976 ProSiteProfiles Pumilio RNA-binding repeat profile. 756 791 IPR001313 GO:0003723
Lja6g2122 976 ProSiteProfiles Pumilio RNA-binding repeat profile. 901 942 IPR001313 GO:0003723
Lja6g2122 976 MobiDBLite consensus disorder prediction 507 534 - -
Lja6g2122 976 SMART pum_5 756 791 IPR001313 GO:0003723
Lja6g2122 976 SMART pum_5 907 942 IPR001313 GO:0003723
Lja6g2122 976 SMART pum_5 684 719 IPR001313 GO:0003723
Lja6g2122 976 SMART pum_5 829 864 IPR001313 GO:0003723
Lja6g2122 976 SMART pum_5 648 683 IPR001313 GO:0003723
Lja6g2122 976 SMART pum_5 865 900 IPR001313 GO:0003723
Lja6g2122 976 SMART pum_5 792 828 IPR001313 GO:0003723
Lja6g2122 976 SMART pum_5 720 755 IPR001313 GO:0003723
Lja6g2122 976 ProSiteProfiles Pumilio RNA-binding repeat profile. 720 755 IPR001313 GO:0003723
Lja6g2122 976 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 45 969 - -
Lja6g2122 976 SUPERFAMILY ARM repeat 633 965 IPR016024 -
Lja6g2122 976 CDD Pumilio 643 964 IPR033712 GO:0003723
Lja6g2122 976 Pfam Pumilio-family RNA binding repeat 724 757 IPR001313 GO:0003723
Lja6g2122 976 Pfam Pumilio-family RNA binding repeat 691 721 IPR001313 GO:0003723
Lja6g2122 976 Pfam Pumilio-family RNA binding repeat 767 782 IPR001313 GO:0003723
Lja6g2122 976 Pfam Pumilio-family RNA binding repeat 652 686 IPR001313 GO:0003723
Lja6g2122 976 Pfam Pumilio-family RNA binding repeat 869 903 IPR001313 GO:0003723
Lja6g2122 976 Pfam Pumilio-family RNA binding repeat 796 831 IPR001313 GO:0003723
Lja6g2122 976 Pfam Pumilio-family RNA binding repeat 834 866 IPR001313 GO:0003723
Lja6g2122 976 Pfam Pumilio-family RNA binding repeat 911 944 IPR001313 GO:0003723
Lja6g2122 976 MobiDBLite consensus disorder prediction 141 174 - -
Lja6g2122 976 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 628 968 IPR033133 GO:0003723
Lja6g2122 976 ProSiteProfiles Pumilio RNA-binding repeat profile. 648 683 IPR001313 GO:0003723
Lja6g2122 976 MobiDBLite consensus disorder prediction 512 526 - -
Lja6g2122 976 ProSiteProfiles Pumilio RNA-binding repeat profile. 684 719 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2122 Lja-Chr6 50083178 50091176 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2122 K17943 - gmx:100811036 1575.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1635 4 15351192 15364566 Lja6g2122 6 50083178 50091176 PCT