Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1635 ATGGCGACTGAGAGTCCGATTAGAATCTCGGAAGCCGGGGGGAAATGGCCAACTCTTAAGGAAGCTGCGACTTTCGGTTCACCGTCTCGTAACGTGGCGACGGAGGATTTGGCTGTTCTTTTGAAGAGCCATAGGTTTTGTGGCAATGGAAGGGATGCGGTGCCCAATCGCAGCGGTAGTGCACCTCCGAGCATGGAAGGGTCATTTATGGCCTCGAATAACCTCTTATCCCAGAACAAGGCCCAGAATGTGGACTTGCTAACTCTGAACAGAGCTATGAAAAAATATGATACTGGTAAAGATTCTTTTCATTTGTCACAAGGAACTCTTGCAACACCCAAGGAGGAGTCTGAGGATGATTCACCCCAACAGCCGTATGATGATGAGTTGGATAAGGCTAGTGGAATATGGCATAGACAGGATGCAGCTTCAGTGACATCTCAGCACAAAAATGAAGATCTTCCCCACACCATGTCACCTGTATATAATAAGTCTCTTGGAGTGGTGGATGAAGTAATTGATTTAGATGCTGGTTCCAGCTCTTCTCAAGACCCTGCTGTCATCACACTAGATTCTGCAAAACCTACAGTAGGTGCAGATGATATAAGGCTGTCAACAAATGTTGATTCCCCTGCCCCTATCACAAGTTCATCATCTCTTGAATCCACTGGAAGTGTGGGCTTTAGTGACTTAGATGTTACAGTCATTGAATCTCAATTAAGGGCTCTTAGTGTATCTAATCTACCAAATTCAGAAAGGCAAAGTTGTGAAGATAAATGGAACAACAGCTGCCAGAATAAGTTGATTCAACATCAGCAACAAAACAATCCACGTGAAGTTCCTAGCACTAATTCTCAAAGTGAAAAATATACATTTGGTGGTACGGTACAGTTTATTCACAATCCCAGCAAGTTTTCCTCTGATGTCCATCCAGTATTGCAGTCATCAGGATTAACACCACCGTTACATGCCCCGGCAGCAGCTTATATGACCTCAACAAATCCATTTTATGGTAATTTGCAGGCTTCAGGTGTATATTCTCCACAATATGTAGGGGGCTACCCTTTTAATCCCGCGGCTGTTCCTCCATATTTTGCTGCATACCCTCCTCATGGTACTGTGCCATTTCTTGTTGATGGGGCTATTGGTTCCAGTTTTACTCTGCAAGCACCGGGGATTTCAACTGGGGGAAACATTTCACATGGAGCTGAAATGTTACCTGCAAGCAAGTTACTAGGACAATATGGATTTCCTCTGCAGCCTTCTTTTGGTGATTCTATGTACATGCAATATCACCAGCAACCTTTTGCGGAGGGATATGGTGTTTCTGGTCATCTGTTAACACCTAGACCGAGTGTTGGTAGCCAAAGTGACCCTTTTGATTCTCAAAAGTGGCCCAATAGTGGTGCTTATTTGGATGACAAAAAAGTGCATTATCAGGGAAATGGTGCGCATTTGAACTCTAGCAGAGGTGGGCTAATGATTCCCAGTTATTTTGGACACCCGCCAAATATGAGATTCGTAATGCAGAATCCAAGTTCCCCACTTTCTAGTCCAGTTTTACCGGCATACCAGGAAAGCAATCCTGGCCTTCCAGGAGGAAGGAATGAAATGAAAGTTTCCCCAGTTTCTGGTAGACATGGAGGTATATTATCTGGATGGCAAGGTCGAAGAACCTTTGACAGTGCTTATGACCCCAAAATTGTTAATTTTCTTGAAGATTTAAAATCTGGCAAAGGTCGCAGATTTGAGCTATCTGATATTATTGGTTATATTGTTGAATTTAGTGCTGATCAGCATGGGAGCCGATTTATCCAGCAGAAGTTGGAAACTTGTGGTGTTGAGGACAAGGCATTGGTGTTCAAAGAGGTTCTTCCACATGCTTCTAAGTTAATGACTGATGTATTTGGTAACTACGTAATCCAGAAGTTCTTTGAGTATGGAAGCCCTAAGCAGAGGAAGGAACTTGCAAATCGACTTGTTGGTCAGATATTGCCTTTAAGTCTGCAGATGTATGGCTGTCGTGTAATCCAAAAGGCACTTGAGGTTATTGATATTGAACAAAAAGTTCAGCTTGTTCATGAGCTAGATGGAAATGTTATGAGATGTGTTCGTGACCAAAATGGGAATCATGTAATACAGAAATGCATCGAATCTATTCCAACTGAAAAAATTGGTTTTATAATATCTGCCTTCCGTGGGCAAGTTCCTATTCTATCTATGCATCCTTATGGTTGCCGAGTCATACAGAGAGTTCTGGAGCATTGCTCAGATGAGGTCCAATGCCAGTTTATTGTGGATGAAATCTTGGAGTCATCTTGCTCTCTCGCTCAGGACCAGTATGGTAATTATGTTACTCAGCATGTGTTGGAGAGAGGCAAGCCTCAAGAAAGGAGCCAAATTATTGGCAGGCTGTCAGGACATATTGTAGAATTGAGCCAGCATAAGTTTGCATCAAATGTTGTTGAGAAATGTTTAGAGTATGGAGATACCACTGAGCGGCAGTTGTTGATTGCAGAGATTGTTGGGCATGATGAACAAAGTGATAATCTATTGACTATGGTGAAAGACCAATTTGCAAATTATGTGGTACAGAAGGTTATTGAGATCTGTTCTGAAAATCAGAGAGCACTGTTGCTTTCTCGCATAAGAGCTCACACTCATGCTTTGAAGAAATACACTTACGGAAAACACATTGTGGCTCGGTTCGAACAGCTACTTGGAGAAGAATACCAAACATCTGGATCTTGA 2751 0.4264 MATESPIRISEAGGKWPTLKEAATFGSPSRNVATEDLAVLLKSHRFCGNGRDAVPNRSGSAPPSMEGSFMASNNLLSQNKAQNVDLLTLNRAMKKYDTGKDSFHLSQGTLATPKEESEDDSPQQPYDDELDKASGIWHRQDAASVTSQHKNEDLPHTMSPVYNKSLGVVDEVIDLDAGSSSSQDPAVITLDSAKPTVGADDIRLSTNVDSPAPITSSSSLESTGSVGFSDLDVTVIESQLRALSVSNLPNSERQSCEDKWNNSCQNKLIQHQQQNNPREVPSTNSQSEKYTFGGTVQFIHNPSKFSSDVHPVLQSSGLTPPLHAPAAAYMTSTNPFYGNLQASGVYSPQYVGGYPFNPAAVPPYFAAYPPHGTVPFLVDGAIGSSFTLQAPGISTGGNISHGAEMLPASKLLGQYGFPLQPSFGDSMYMQYHQQPFAEGYGVSGHLLTPRPSVGSQSDPFDSQKWPNSGAYLDDKKVHYQGNGAHLNSSRGGLMIPSYFGHPPNMRFVMQNPSSPLSSPVLPAYQESNPGLPGGRNEMKVSPVSGRHGGILSGWQGRRTFDSAYDPKIVNFLEDLKSGKGRRFELSDIIGYIVEFSADQHGSRFIQQKLETCGVEDKALVFKEVLPHASKLMTDVFGNYVIQKFFEYGSPKQRKELANRLVGQILPLSLQMYGCRVIQKALEVIDIEQKVQLVHELDGNVMRCVRDQNGNHVIQKCIESIPTEKIGFIISAFRGQVPILSMHPYGCRVIQRVLEHCSDEVQCQFIVDEILESSCSLAQDQYGNYVTQHVLERGKPQERSQIIGRLSGHIVELSQHKFASNVVEKCLEYGDTTERQLLIAEIVGHDEQSDNLLTMVKDQFANYVVQKVIEICSENQRALLLSRIRAHTHALKKYTYGKHIVARFEQLLGEEYQTSGS* 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1635 916 ProSiteProfiles Pumilio RNA-binding repeat profile. 840 881 IPR001313 GO:0003723
Lja4g1635 916 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 52 906 - -
Lja4g1635 916 ProSiteProfiles Pumilio RNA-binding repeat profile. 695 730 IPR001313 GO:0003723
Lja4g1635 916 ProSiteProfiles Pumilio RNA-binding repeat profile. 623 658 IPR001313 GO:0003723
Lja4g1635 916 MobiDBLite consensus disorder prediction 208 223 - -
Lja4g1635 916 CDD Pumilio 582 902 IPR033712 GO:0003723
Lja4g1635 916 Pfam Pumilio-family RNA binding repeat 706 729 IPR001313 GO:0003723
Lja4g1635 916 Pfam Pumilio-family RNA binding repeat 851 883 IPR001313 GO:0003723
Lja4g1635 916 Pfam Pumilio-family RNA binding repeat 736 770 IPR001313 GO:0003723
Lja4g1635 916 Pfam Pumilio-family RNA binding repeat 775 803 IPR001313 GO:0003723
Lja4g1635 916 Pfam Pumilio-family RNA binding repeat 663 696 IPR001313 GO:0003723
Lja4g1635 916 Pfam Pumilio-family RNA binding repeat 592 625 IPR001313 GO:0003723
Lja4g1635 916 Pfam Pumilio-family RNA binding repeat 808 841 IPR001313 GO:0003723
Lja4g1635 916 Pfam Pumilio-family RNA binding repeat 628 658 IPR001313 GO:0003723
Lja4g1635 916 MobiDBLite consensus disorder prediction 100 129 - -
Lja4g1635 916 ProSiteProfiles Pumilio RNA-binding repeat profile. 659 694 IPR001313 GO:0003723
Lja4g1635 916 ProSiteProfiles Pumilio RNA-binding repeat profile. 768 803 IPR001313 GO:0003723
Lja4g1635 916 PANTHER PUMILIO HOMOLOG 6, CHLOROPLASTIC 52 906 - -
Lja4g1635 916 Gene3D - 568 911 IPR011989 -
Lja4g1635 916 ProSiteProfiles Pumilio RNA-binding repeat profile. 804 839 IPR001313 GO:0003723
Lja4g1635 916 ProSiteProfiles Pumilio RNA-binding repeat profile. 587 622 IPR001313 GO:0003723
Lja4g1635 916 SMART pum_5 623 658 IPR001313 GO:0003723
Lja4g1635 916 SMART pum_5 695 730 IPR001313 GO:0003723
Lja4g1635 916 SMART pum_5 659 694 IPR001313 GO:0003723
Lja4g1635 916 SMART pum_5 804 839 IPR001313 GO:0003723
Lja4g1635 916 SMART pum_5 587 622 IPR001313 GO:0003723
Lja4g1635 916 SMART pum_5 768 803 IPR001313 GO:0003723
Lja4g1635 916 SMART pum_5 731 767 IPR001313 GO:0003723
Lja4g1635 916 SMART pum_5 846 881 IPR001313 GO:0003723
Lja4g1635 916 MobiDBLite consensus disorder prediction 204 223 - -
Lja4g1635 916 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 567 907 IPR033133 GO:0003723
Lja4g1635 916 ProSiteProfiles Pumilio RNA-binding repeat profile. 731 767 IPR001313 GO:0003723
Lja4g1635 916 SUPERFAMILY ARM repeat 571 903 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1635 Lja-Chr4 15351192 15364566 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1635 K17943 - gmx:100819166 1347.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1635 4 15351192 15364566 Lja6g2122 6 50083178 50091176 PCT