Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2104 ATGGTAAATAAGGAAGAGAAGAAAGAAAAGCAAATTACACTCACAAGACCACAAACACTTGATAAGGAATCTGATTCAGAAGCTACTTACAATGCCCCTAATCTTTTGCAACGCGTCTTAAGTTTATTCAAGAATATTCGTCCAGGGTCTGATCTCACCCGCTTACAGCTGCCACCATTGTTCAACTTACCAAAGTCACAACTTCAGTGCTATGGTGAATCAGTGTATTGCGCGGCTTCGGACATGCTAAGTGTGTGCAACAGAGGGCAGAGTCCATTGGATAGGTTCATATCAGTGGTGGCATGGTGCATATCCACCACACGCCCTGCAACTTTTGGGGCTGCTCCTTATAATCCCATTCTTGGTGAGACACATCATGTTTCCAAAGGAAATCTTAATGTGTTACTTGAACAGGTTTCCCATCACCCTCCAGTAACTGCCCTGCATGCAACAGATGAGAAGGAGAACATAGAAATGCTATGGTGTCAGCAACCTGTTCCAAAGTTTTATGGCACATCAGTTGAAGCTCAAGTGCATGGTATACGTCGGTTGAAGCTCCTAAATCATGGCGAAACATATGAAATGAATTGTCCTCACCTTCTGTTTAGAATTCTTCCAGTTCCTGGGGCTGATTGGGTTGGCACAGTTACTATAAGATGCCTAGAAACAGGTCTGGTAGCTGAGTTATCCTACAGATCAACTCATTCTTTTCTAGGTATTGGGGGAAATCATAAAGTGATCAAAGGGAAGATCCGTGACCCTTCATCTTTGAAAGTTCTATATGAAGTTGATGGTCATTGGGATAGAACTGTGAAATTGAAGGATCCAAAAAATGGGATGGTTAGAGTCATATATGATGCAAAGGAAGTCATGTCAGGGCTCCAAGTTCCTATTCTTAAAGATGCAGAGAGTGTGTTGCCAACAGAATCAGCCCATGTTTGGAGTGAATTGAGTGAAGCTATTCTGAGAAAAGAGTGGGAGAAAGCAAGAGAAGCAAAGCATGCAGTGGAGGAAAAACAGAGGGAACTCATGACAGAAAGAGAAACAAAAGGAGAAACTTGGAGTCCTAAGCATTTTATTGTATCTTACAGCAAAGAATCAGGGTGGGACTGTGTACCTACTCAAAAATGGGTTTCAGCAGCTCCCATTATAGCACAATGA 1161 0.4238 MVNKEEKKEKQITLTRPQTLDKESDSEATYNAPNLLQRVLSLFKNIRPGSDLTRLQLPPLFNLPKSQLQCYGESVYCAASDMLSVCNRGQSPLDRFISVVAWCISTTRPATFGAAPYNPILGETHHVSKGNLNVLLEQVSHHPPVTALHATDEKENIEMLWCQQPVPKFYGTSVEAQVHGIRRLKLLNHGETYEMNCPHLLFRILPVPGADWVGTVTIRCLETGLVAELSYRSTHSFLGIGGNHKVIKGKIRDPSSLKVLYEVDGHWDRTVKLKDPKNGMVRVIYDAKEVMSGLQVPILKDAESVLPTESAHVWSELSEAILRKEWEKAREAKHAVEEKQRELMTERETKGETWSPKHFIVSYSKESGWDCVPTQKWVSAAPIIAQ* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2104 386 PANTHER OSBP(OXYSTEROL-BINDING PROTEIN)-RELATED PROTEIN 4C 6 384 - -
Lja6g2104 386 Pfam Oxysterol-binding protein 43 316 IPR000648 GO:0008289
Lja6g2104 386 Coils Coil 329 349 - -
Lja6g2104 386 Gene3D - 306 379 - -
Lja6g2104 386 SUPERFAMILY Oxysterol-binding protein-like 38 371 IPR037239 -
Lja6g2104 386 Gene3D - 120 296 - -
Lja6g2104 386 MobiDBLite consensus disorder prediction 1 27 - -
Lja6g2104 386 ProSitePatterns Oxysterol-binding protein family signature. 137 147 IPR018494 -
Lja6g2104 386 MobiDBLite consensus disorder prediction 1 23 - -
Lja6g2104 386 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 6 384 IPR000648 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2104 Lja-Chr6 49660026 49666056 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2104 K22285 - gmx:100810995 635.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2104 6 49660026 49666056 Lja6g2104 6 49660026 49666056 ECH
Lja4g1627 4 15247003 15252535 Lja6g2104 6 49660026 49666056 PCT