Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1627 ATGCAGGTGACCGATGGAAAGAAGCAATCTAAGATTTTTCTCACGAAGCCTTTCACATTGGAAGGTGAATCAGATTTAGACCCATCTTATAGAGCTCCTAATCTCCTTCAACGCTTGTTAAGTTTACTTAAGAATATACGGCCAGGATCAGATCTCACACACTTCCAGCTTCCACCTGCGTTTAACTTCCCAAAATCTCAACTTCAGTGCTATGGTGAATCAGTGTACTGCACAAATTCAAACTTGCTGAGCAGGTGCAACAGTGGGGAGAATCCAGTGGATAGGTTCACATCTGTTGTAGCATGGAGCATATCTACCACACGCCCTACATCTTTTGGGGTTGCGCCCTACAATCCCACTCTTGGAGAGACACACCATGTTTCCAATGGCAACCTTAATGTCTTACTGGAACAGGTTTCACTTGACCCTCCAGTATCTGCCCTCCATGCAACAGATGAGAAAGAAAACATTGAAATGATATGGTGCCAGCAACCTATTCCAAAATTTAGAGGTACATCTATTGAAGCACAAGTGCATGGTAAAAGGGTGCTGAAGCTCCTAAATCATGGAGAAACATATGAAATGAATTCTCCTAATCTTTTGATTAGAATTCTTCCTGTTCCTGGGGTTGATTGGGTTGGCAATGTTAATATACGATGCATAGAGACAGGCCTGGAAGCTGAGTTATCCTACAAAAGCCATTCTTATGCAGGACTTGGGGGAAATAGAAGATTGATCAGAGGGAAGATCCTTGACTCATCATCATTGAAAGTTCTATATGAAGTTGATGGTCATTGGGATAGAACTGTGAAAGTAAAGGACACAAATAATGGGGAAGCAAGAGTGATATATGATGCAAAACAAGTCATTTCAGGGCTCAAAGCTCCTATTGTAAAGGACAAAGAGAGTGTGTGGGCAACAGAATCAGCCCTTGTGTGGAGTGAGTTGAGCCAAGCCATCATCAACAAAGAGTGGGAGAAAGCCAAGGAAGCAAAGCAAGATGTGGAAGAAAGGCAGAGGAAGATGTCAATGGAAAGGGACACAAAAGGAGAAAGTTGGGTTCCTAAGAATTTCAGGGTGTCTTGCAGCAGTAAAGAAGGTAAGTGGGAGTGGAACTGTTCACCCATTCATAAATGGGTCCCTGATGCTCCCATTATAGCCCGATCATTTAAAGTTTAA 1179 0.4266 MQVTDGKKQSKIFLTKPFTLEGESDLDPSYRAPNLLQRLLSLLKNIRPGSDLTHFQLPPAFNFPKSQLQCYGESVYCTNSNLLSRCNSGENPVDRFTSVVAWSISTTRPTSFGVAPYNPTLGETHHVSNGNLNVLLEQVSLDPPVSALHATDEKENIEMIWCQQPIPKFRGTSIEAQVHGKRVLKLLNHGETYEMNSPNLLIRILPVPGVDWVGNVNIRCIETGLEAELSYKSHSYAGLGGNRRLIRGKILDSSSLKVLYEVDGHWDRTVKVKDTNNGEARVIYDAKQVISGLKAPIVKDKESVWATESALVWSELSQAIINKEWEKAKEAKQDVEERQRKMSMERDTKGESWVPKNFRVSCSSKEGKWEWNCSPIHKWVPDAPIIARSFKV* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1627 392 SUPERFAMILY Oxysterol-binding protein-like 38 372 IPR037239 -
Lja4g1627 392 Coils Coil 392 392 - -
Lja4g1627 392 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 1 386 IPR000648 GO:0008289
Lja4g1627 392 PANTHER OSBP(OXYSTEROL-BINDING PROTEIN)-RELATED PROTEIN 4C 1 386 - -
Lja4g1627 392 Gene3D - 118 295 - -
Lja4g1627 392 Gene3D - 306 379 - -
Lja4g1627 392 Pfam Oxysterol-binding protein 40 372 IPR000648 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1627 Lja-Chr4 15247003 15252535 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1627 K22285 - gmx:100813302 651.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1627 4 15247003 15252535 Lja6g2104 6 49660026 49666056 PCT