Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2100 ATGGTCATGCCTCCTTCTCTGGTGGATCCATTGTTACCGTCTCCTTCGAGCTCTGACTCTGTTCCTCCGAGATCGGCGCCGGAGAATCGGCGATTCGGTGATCTTAGAGGCTTGCAGTGGCGTATAAATCTTGGGGTGTTGCCGTCTGCGTCTTCAGCTTCCATTGATGTTCTTCGTCGGGTCACTGCTGATTGTAGAAGGAGGTATGCTAGTTTGAGAAGGCGCCTCCTTGTTGAACCACATGTTCGAAAGGATGGAACTAATTCACCTAATGCTGTCGTGGACAATCCACTTTCACAAAATCCAGATAGTACATGGAGTCGCTTTTTTCGCAATGCAGAGCTGGAGAGAATGGTTGATCAGGATTTGTCACGCTTATACCCAGAACATGGCAGTTATTTCCAGACACCGGGATGCCAAGGCATGTTGAGACGAATTTTATTACTATGGTGTCTCAGGCACCCAGAATGTGGTTATAGACAAGGAATGCATGAATTACTTGCTCCTCTGCTTTATGTTCTCCAAGTTGATTTGGAGCGTCTTTCAGAAGTTCGGAAGCTTTATGAAGATCAATTCACAGACAGATTTGATGGCCTTCTATGCCAAGAGAATGATCTTGCTTACAGTTTCGATTTTATGAAATATCCAGACCAGGTAGAGAATGAAATTGGCTCCTGTGGAAATGCAATGAAAGTCAATAGTCTTGATGAACTTGATCCTGAGATAAGGACTATTGTATTGCTAAGTGATGCATATGGAGCTGAAGGTGAACTGGGCATCGTTTTATCTGAGAAATTCATGGAACATGATGGTTACTGTATGTTTGATGCTTTAATGAAGGGGTACCATGGTTCAGTTGCAATGGCGGATTTCTTCTCTTCCTCCCCTGTAGCTGGGTCCCATACTGGCCTTCCTCCAGTTATTGAAGCCTCTACTGCATTGTATCATTTGTTGTCTGTTGTGGATTCATCTCTGCATAGCCATCTTTTTGACCTTGGGGTTGAACCTCAGTACTTTTCTCTCCGATGGTTGCGAGTTTTATTTGGACGGGAATTTTCACTTGACAACCTCTTGCTCGTCTGGGATGAGATTTTCGCATCGGATAATAGCAAAAAAGAAAGAAGTGCAGATGATAACATAGAATGTGGGTTTGGGATCTTAAATTCACCTCGTGGAGCATTTATCTCAGCTATGGCTGTAGCAATGTTACTTCATTTGAGATCTTCACTACTTGCAGCTGAAAACCCTACAACCTGTCTCCAGAGATTACTAAACTTCCCTGAAAACATTGATATTGAAAAACTACTGGAGAAGGCTAAATCATTGCAGGACCTTGCATTAAGTGTTGATATTTCGTCCTCGTCGCTTTTGTTTGTAGGGTCTCATCACCAAAGTAAGTTTATGTCTACAAGACCCGTGACCTTTCCATCTGAATCTGTCTCTCCAAAAACTCCTCTGAACGTGGTACCTGATAGCTACTGGGAAGAAAAGTGGAGAGTTGCCCACAAGGATGAAGAGCTTAAGAAAGATGGTGCAGAAAATCAGGTTCCAACTCGGAAGAAGGGATGGACAGAAAAGGTAAAGTTCAGTTTAAGAAGAACAGAGTCTGATCCATCTCCATCTAGGATTCAGAATGGAAAAAAGGAACCTAAGGTATCTGTTAGGCGCAGTCTGTTAAAAGATCTTTGTAAGGCACTTGGCTCGGAGGAAGATACAGAAAAATTACAGGGTCCTGAAACCCTAGGCCAGCAAGATAATCTTTCTGAAGCAGTTGAAGTAGAGGAGCAAGGTGATGGCTGTAATGGTGACAACAATTACTCATCTGATGATAGAAGTCCCAGTGGGAATTCTGATTCATCTACATATTTTGACCCGACTAGTCCTCCTAATGAGGCCAATGATCATGAAATTACCTTAGAGAAAAGTAGTGTTGGGTCAAATTTATCCCTTGGTGAATGCAGTGAAACTTCAGATACCAGTCCTAATGATTCACTGCTTCCAATCTCTCATCCTCCTGAGAGCATACCTCAGGCATCAGGGTGCAATAATGACGATGCAGGAAATCCAGGATGCCATGAAATTTCAGAAGCCAGTTCCAATAATGAGGCTACAAAATCAGGGTGCAATAATGATGATGCAGGAAATCCTCAATGCAATGAAATTTCAGATAATGGTCCAAATAATTCACCATCTCCAATCTCTGGTCCTCCTGAGAACACACCTCAGACGTGCAATAATGATGATTCAGGAAATTCAGTCACACATCCTAAAGAGAGAAAACAAAATAAATTCCAGTGGCTTTGGAAGTTTGGACGGAATAATGCTGACGTTATCTCTGAGAAAGTAGGAGGTGCTGCTGAGGCTACAAAACCTACCAACAGTTCTAGCAGCCAAAGTAATAGACCCGCGCCGGCCTCATCTACATCTAATGGTCATTGTAGTTCTGTTAGCTATGGAGGAGAATCTGTGGACCAGAATGTGATGGGAACTTTGAAGAATCTTGGGCAGTCTATGCTTGACCATATTCAGGTGATTGAATCTGTTTTCCAACAAGACCGGGGACAGGGAGCCTCAATGGAGAACTTATCTAAGAATGTTCTTGTTGGCAAAGGCCAGGTTACTGCCGTGACAGCTCTCAAGGAGCTTCGGAAAATTAGCAATCTTTTGTCGGAAATGTGA 2679 0.4311 MVMPPSLVDPLLPSPSSSDSVPPRSAPENRRFGDLRGLQWRINLGVLPSASSASIDVLRRVTADCRRRYASLRRRLLVEPHVRKDGTNSPNAVVDNPLSQNPDSTWSRFFRNAELERMVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLRHPECGYRQGMHELLAPLLYVLQVDLERLSEVRKLYEDQFTDRFDGLLCQENDLAYSFDFMKYPDQVENEIGSCGNAMKVNSLDELDPEIRTIVLLSDAYGAEGELGIVLSEKFMEHDGYCMFDALMKGYHGSVAMADFFSSSPVAGSHTGLPPVIEASTALYHLLSVVDSSLHSHLFDLGVEPQYFSLRWLRVLFGREFSLDNLLLVWDEIFASDNSKKERSADDNIECGFGILNSPRGAFISAMAVAMLLHLRSSLLAAENPTTCLQRLLNFPENIDIEKLLEKAKSLQDLALSVDISSSSLLFVGSHHQSKFMSTRPVTFPSESVSPKTPLNVVPDSYWEEKWRVAHKDEELKKDGAENQVPTRKKGWTEKVKFSLRRTESDPSPSRIQNGKKEPKVSVRRSLLKDLCKALGSEEDTEKLQGPETLGQQDNLSEAVEVEEQGDGCNGDNNYSSDDRSPSGNSDSSTYFDPTSPPNEANDHEITLEKSSVGSNLSLGECSETSDTSPNDSLLPISHPPESIPQASGCNNDDAGNPGCHEISEASSNNEATKSGCNNDDAGNPQCNEISDNGPNNSPSPISGPPENTPQTCNNDDSGNSVTHPKERKQNKFQWLWKFGRNNADVISEKVGGAAEATKPTNSSSSQSNRPAPASSTSNGHCSSVSYGGESVDQNVMGTLKNLGQSMLDHIQVIESVFQQDRGQGASMENLSKNVLVGKGQVTAVTALKELRKISNLLSEM* 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2100 892 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 34 328 IPR035969 -
Lja6g2100 892 MobiDBLite consensus disorder prediction 592 759 - -
Lja6g2100 892 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 720 814 - -
Lja6g2100 892 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 8 551 - -
Lja6g2100 892 MobiDBLite consensus disorder prediction 506 554 - -
Lja6g2100 892 MobiDBLite consensus disorder prediction 783 818 - -
Lja6g2100 892 PANTHER YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN 720 814 - -
Lja6g2100 892 PANTHER YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN 8 551 - -
Lja6g2100 892 MobiDBLite consensus disorder prediction 693 729 - -
Lja6g2100 892 Pfam Rab-GTPase-TBC domain 116 175 IPR000195 -
Lja6g2100 892 Pfam Rab-GTPase-TBC domain 269 368 IPR000195 -
Lja6g2100 892 MobiDBLite consensus disorder prediction 506 535 - -
Lja6g2100 892 ProSiteProfiles TBC/rab GAP domain profile. 30 368 IPR000195 -
Lja6g2100 892 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 100 285 - -
Lja6g2100 892 SMART tbc_4 17 414 IPR000195 -
Lja6g2100 892 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 304 443 IPR035969 -
Lja6g2100 892 MobiDBLite consensus disorder prediction 600 667 - -
Lja6g2100 892 Gene3D - 307 449 - -
Lja6g2100 892 MobiDBLite consensus disorder prediction 1 32 - -
Lja6g2100 892 MobiDBLite consensus disorder prediction 788 818 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2100 Lja-Chr6 49595847 49601124 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2100 K18469 - gmx:100812967 1246.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2100 6 49595847 49601124 Lja6g2100 6 49595847 49601124 ECH
Lja4g1624 4 15203832 15209466 Lja6g2100 6 49595847 49601124 PCT