Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1624 ATGCCGCCGGCAATGATGAACCCGCCATTGCTCAAACCATCGTCGGTACCGCCTGTAAGCTCCGGCACAGTTTCTCAGGGTTCCGAGCCGGAGAATCAGGAATTCGGGGACCTTAGAGGTTTGCAGTGGCGTATAAATCTTGGGGTTTTGCCACCATCATCATCATCATCTTCTTCAGCTTACATTGATGATCTTCGTCGCGCCACCGCTAATTCTCGAAGGAGATATGCCAGTTTGAGAAGGCGCCTCCTGGCCGATCCTCATATTTCAAAGGATGGAAGTAGTTCACCTTCACCCAATCTTGTCATGGACAACCCACTTTCACAAAATCCTGATAGTACATGGAGTCGCTTTTTTCGCAACGCAGAGCTGGAGAGGATGGTTGATCAGGATCTATCTCGTTTATACCCAGAACATGGCAACTATTTCCAGACACCAGGATGCCAAGGCATATTGAGACGAATTTTATTACTTTGGTGCGTCAAACACCCAGAGTGTGGTTATAGACAAGGAATGCATGAATTACTTGCCCCGGTGCTTTACGTTCTCCAAGTTGATATTGAGCGTCTTTCAGAAGTTCGAAAGACTTATGAAGATTACTTCACTGATATATTTGATGGTCTCTTTTGTCAAGAGAATGATCTTTCTTACAGATTTGATTTCAGAAAATCTTCAGAGTTGACGGAGGATGAAATTGGCTCCAATGAAAATGCAATGAAAATCAAGAGTCTTGATGATCTTGATCCTAAGATACAGGCAATTGTATTGCTAAGTGATGCTTATGGGGCTGAGGGTGAACTCGGAGTTGTTTTATCTGAAAAATTCATCGAACATGATGCTTATTGTATGTTTGATGCTATAGTGAACGGGGCTCATGGTTCAGTTGCAATGGCTGATTTCTTCTCTTATTCACCTGTGGCTGGGTCTCATAGTGGGTTGCCTCCTGTAATTGAAGCTTCTGTTGCTTTGTATCATTTGTTGTCTCATGTGGATTCCTCACTGCATAGCCATCTTGTTGATCTCGGGGTTGAGCCCCAGTACTTTGCTCTCCGCTGGTTGCGAGTTTTGTTTGGACGTGAATTCTCACTTAATAACCTCTTGATCGTCTGGGATGAGATCTTTTTATCAGATAATAGTAAAGTGGAAAAGCATGATGAGGACAAAAATGATTCTGGTTTTAGGATCTTTCATTCATCTCGTGGAGCATTTATCTCGGCCATGGCCGTAGCAATGTTACTTCATTTAAGATCTTCGCTACTTGCAACTGAAAATCCTACAACCTGTCTCCAGAGATTATTAAGCTTTCCTGAGAACACTAACATTCAAAAACTAATAGAGAAAGCTAAATCCTTGCAGGCTCTTGCATTGAGTACTGAATTTTCATCCTCGGCACCTTCTTTCTTAGAGTATCATAACCCAGGAAAATCAGTTTTTACTAGATCTAATACCCTTCCATCTGAATCAGCTTCACCAAAATCTCCTCTGAATGGTAGCTACTGGGAAGAGAAGTGGAGAGTTGTCCACAGTACTGAAGAAGTTAAACAAGACGGTCTAGAAAAACAGGTTCCAAATCGGAAAAAGAGATGGACAGAGAAGGTAAAGTTCAGTTTGAAAAGAACAGAATCTGACCCTTCTTCATCAAGGAATAAGAGTGATAAGAAGGAAGCTAAGGAATCTATTAGGCGCAGTTTAATGGAAGATCTTTCAAAGGAACTTGGTTCAGAGGAAGATACCGAAAAACAGCACTGTCATGAAACTTCATGTCAGCCGGATAATCTTTCAGTAGCCATTGAAGCGGAGCAACAAGATGATGGCTCTGAAGGTTGTGGCAATAGTTGCGGTGCTGAAGATAGATGTCTGAGAGGAAACACTAGCAATGAGGTAAACTTATCTGGCTCAGCTAGTCCCCATAATGAGGCCAACGATCGTGAAAATGACTCTCAGAAAAGTAGTGTTGCTTCGAATTTATCCCTTGATGACATTAATGAAACTTCACTTTCCCTTGATTCACCTCTTCCAATCTCTGATCATCCTGAGAACATATCTCAGATGTCAGGCTGCAATGATGATTCCATAGGAAATTTGATCACACACTCCAAGGAGAGAAAACTGAATAAATTCCAGTGGCTTTGGAAGTTTGGGCGCAATAATGGCGAATTTATTACTGAGAAAAGAGGAGGTGCTTCTGAGGCTGAAAAACCTGCCAACAATTGTAATGATCAAAGTAATAGAGCTCCCTCTTCAGCTGATGGGAATTGTAGTTCTAGTAGTTGCAAAGGGGAATCTGTAGACCAGAATGTGATTGACACTTTAAGGAATCTTGGGCAATCAATGCTTGAACATATTCAGGTGATTGAGTCTACTTTCCAACAAGGCCAGGGAGCTTCAATGGATATCATGTCTAAAAATGTTGTGGGTGGCAAAGGGCAGGTTGCAGCCATATCAGCTCTCAAGGAACTCCGCAAAATTAGCAATCTTTTATCTGAGATGTGA 2493 0.4208 MPPAMMNPPLLKPSSVPPVSSGTVSQGSEPENQEFGDLRGLQWRINLGVLPPSSSSSSSAYIDDLRRATANSRRRYASLRRRLLADPHISKDGSSSPSPNLVMDNPLSQNPDSTWSRFFRNAELERMVDQDLSRLYPEHGNYFQTPGCQGILRRILLLWCVKHPECGYRQGMHELLAPVLYVLQVDIERLSEVRKTYEDYFTDIFDGLFCQENDLSYRFDFRKSSELTEDEIGSNENAMKIKSLDDLDPKIQAIVLLSDAYGAEGELGVVLSEKFIEHDAYCMFDAIVNGAHGSVAMADFFSYSPVAGSHSGLPPVIEASVALYHLLSHVDSSLHSHLVDLGVEPQYFALRWLRVLFGREFSLNNLLIVWDEIFLSDNSKVEKHDEDKNDSGFRIFHSSRGAFISAMAVAMLLHLRSSLLATENPTTCLQRLLSFPENTNIQKLIEKAKSLQALALSTEFSSSAPSFLEYHNPGKSVFTRSNTLPSESASPKSPLNGSYWEEKWRVVHSTEEVKQDGLEKQVPNRKKRWTEKVKFSLKRTESDPSSSRNKSDKKEAKESIRRSLMEDLSKELGSEEDTEKQHCHETSCQPDNLSVAIEAEQQDDGSEGCGNSCGAEDRCLRGNTSNEVNLSGSASPHNEANDRENDSQKSSVASNLSLDDINETSLSLDSPLPISDHPENISQMSGCNDDSIGNLITHSKERKLNKFQWLWKFGRNNGEFITEKRGGASEAEKPANNCNDQSNRAPSSADGNCSSSSCKGESVDQNVIDTLRNLGQSMLEHIQVIESTFQQGQGASMDIMSKNVVGGKGQVAAISALKELRKISNLLSEM* 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1624 830 MobiDBLite consensus disorder prediction 624 653 - -
Lja4g1624 830 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 37 337 IPR035969 -
Lja4g1624 830 MobiDBLite consensus disorder prediction 16 32 - -
Lja4g1624 830 ProSiteProfiles TBC/rab GAP domain profile. 33 377 IPR000195 -
Lja4g1624 830 MobiDBLite consensus disorder prediction 734 761 - -
Lja4g1624 830 MobiDBLite consensus disorder prediction 1 15 - -
Lja4g1624 830 MobiDBLite consensus disorder prediction 624 638 - -
Lja4g1624 830 Gene3D - 316 460 - -
Lja4g1624 830 MobiDBLite consensus disorder prediction 87 108 - -
Lja4g1624 830 Pfam Rab-GTPase-TBC domain 125 184 IPR000195 -
Lja4g1624 830 Pfam Rab-GTPase-TBC domain 319 378 IPR000195 -
Lja4g1624 830 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 2 763 - -
Lja4g1624 830 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 109 293 - -
Lja4g1624 830 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 313 452 IPR035969 -
Lja4g1624 830 Coils Coil 62 82 - -
Lja4g1624 830 MobiDBLite consensus disorder prediction 534 586 - -
Lja4g1624 830 MobiDBLite consensus disorder prediction 534 591 - -
Lja4g1624 830 MobiDBLite consensus disorder prediction 91 108 - -
Lja4g1624 830 SMART tbc_4 24 423 IPR000195 -
Lja4g1624 830 MobiDBLite consensus disorder prediction 724 761 - -
Lja4g1624 830 MobiDBLite consensus disorder prediction 1 34 - -
Lja4g1624 830 PANTHER YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN 2 763 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1624 Lja-Chr4 15203832 15209466 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1624 K18469 - gmx:100816501 1172.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1624 4 15203832 15209466 Lja4g1624 4 15203832 15209466 ECH
Lja4g1624 4 15203832 15209466 Lja6g2100 6 49595847 49601124 PCT