Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2097 ATGGGAACGTTTCAGAGCTTCAGAAAGGCCTATGGAGCTCTTAAGGACTCTACCAAGGTTGGCCTTGCCAAAGTCAATAGCGAATACAAGGAGTTGGATATTGCAATTGTAAAGGCTACCAATCATGTGGAATATCCTCCCAAAGAACGCCATGTTCGAAAAATATTCTATGCGACATCAGCACACCAACCACGAGCAGATGTGGCATATTGCATTCATAAACTTTCCAAGAGGCTTGGCAAGACACGAAGTTGGATAGTTGCTATAAAGACATTGATAGTAATTCACAGGACTTTGAGAGAAGGTGATCCTACCTTCAGAGAAGAGATTCTAAACTACACACGTAGGGGACATATTTTCCAAATATCCAATTTCAAAGATGACTCAAGCCCTCAAGCTTGGGATTGTTCAGCTTGGGTTCGAACCTACGCACTATTCTTAGAAGAAAGACTTGAATGTTTTAGAATACTTAAATATGACATCGAATCTGAGCGTATAATCAAATCATCACCAGCTGCAACTAAAGGACATAGTAGAACTCGGTCAGCGGGTGCTGAAGATCTTTTGGAGCAGCTACCGGCATTGCAGCAACTTCTATATCGTCTAATCGGTTGTCAGCCTGAAGGATGTGCTTACAGCAATTATCTAGTGCAGTATGCATTGGCCCTGGTATTGAAGGAGAGCTTCAAGATATATTGTGCACTCAATGATGGAATCATCAATCTTGTGGACTTGTTCTTCGATATGTCAAGACATGACGCGGTGAAAGCTCTAAATATTTATAAAAGAGCTGGCCAACAGGCTGAAAATCTAGCTGAATTTTATGAGTACTGCAAAGGCTTGGATCTTGCTAGAAATTTCCAATTTCCAATGCTGAGACAGCCACCTCCCTCTTTCCTTGCCACAATGGAGGAATACATTAGAGAAGCACCCCAAACAGGCTCTGTAAATAAGAGACTGGAGTATCAAGAAAATGATCAATCACCGAAAGAAGAATCAGAATCCAATGAACCCGAAGAGCCTCAAGAAAGTGAGAAAGAAGAAGAGGAGGTTAAGGAGGAAGAACCAATAGCAGAGGAAGAACAACAACCAAAGGAAGAGGAGGAGGTTGAGCCTCCTCCTTTGATATCAACTGATGATACAGATTTGCTGGGTCTAAATGAAATAAATCCAAAAGCTGCAGAACTGGAGCAAAACAATGCTATGGCCCTTGCAATCTTACCACCTGATGGCCATAATCCAAACAATCTTGCTTTAAGTAGCATTGGTGGGACAACTGGTTGGGAGCTTGCACTCGTCACAGCACCAAGTAACCACACCAATCAAGCACCAGATCGCAAAATGGCTGGTGGTTTTGACAAGCTATTACTAGATAGTTTGTATGAAGATGATAATGCAAGGAGACAACATCAACTCCAAATGGCTGGTTATGGACATGGGGGAGTGCCTGTGGAAAATCCATTTGATCATTATAATCAGCAGCATGATCCATTTGCAATGTCCTCCAACATAGCACCTCCAACCAATGTGCAATTAGCATTACTGGCACAACAACAGCAACAACACCAAATGATGTACCAGCAGCCTCAACAACAACAACAACACATGATGTTCCAACCACAACATCACAACATGATGATGGTCCCTCACCCACAACATACCCAATACCCTCACCAGATGCAGAGTGGGGATCCTAACAATCCTTTTGGAGATCCCTTACCTGTGCCTAGCTATCCTCACAGTTCCTTGCCTCAACAAGGAAATTACAATTTAATGTAG 1779 0.4255 MGTFQSFRKAYGALKDSTKVGLAKVNSEYKELDIAIVKATNHVEYPPKERHVRKIFYATSAHQPRADVAYCIHKLSKRLGKTRSWIVAIKTLIVIHRTLREGDPTFREEILNYTRRGHIFQISNFKDDSSPQAWDCSAWVRTYALFLEERLECFRILKYDIESERIIKSSPAATKGHSRTRSAGAEDLLEQLPALQQLLYRLIGCQPEGCAYSNYLVQYALALVLKESFKIYCALNDGIINLVDLFFDMSRHDAVKALNIYKRAGQQAENLAEFYEYCKGLDLARNFQFPMLRQPPPSFLATMEEYIREAPQTGSVNKRLEYQENDQSPKEESESNEPEEPQESEKEEEEVKEEEPIAEEEQQPKEEEEVEPPPLISTDDTDLLGLNEINPKAAELEQNNAMALAILPPDGHNPNNLALSSIGGTTGWELALVTAPSNHTNQAPDRKMAGGFDKLLLDSLYEDDNARRQHQLQMAGYGHGGVPVENPFDHYNQQHDPFAMSSNIAPPTNVQLALLAQQQQQHQMMYQQPQQQQQHMMFQPQHHNMMMVPHPQHTQYPHQMQSGDPNNPFGDPLPVPSYPHSSLPQQGNYNLM* 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2097 592 Gene3D ANTH domain 174 326 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Lja6g2097 592 PANTHER CLATHRIN ASSEMBLY PLANT-LIKE PROTEIN 1 579 - -
Lja6g2097 592 MobiDBLite consensus disorder prediction 311 382 - -
Lja6g2097 592 SMART enth_2 30 161 IPR013809 -
Lja6g2097 592 SUPERFAMILY GAT-like domain 178 309 - -
Lja6g2097 592 Pfam ANTH domain 31 309 IPR011417 GO:0005543
Lja6g2097 592 PANTHER CLATHRIN ASSEMBLY PROTEIN 1 579 IPR045192 GO:0048268|GO:0072583
Lja6g2097 592 Gene3D - 5 161 IPR008942 -
Lja6g2097 592 ProSiteProfiles ENTH domain profile. 24 161 IPR013809 -
Lja6g2097 592 CDD ANTH_N 32 154 - -
Lja6g2097 592 SUPERFAMILY ENTH/VHS domain 31 162 IPR008942 -
Lja6g2097 592 MobiDBLite consensus disorder prediction 551 592 - -
Lja6g2097 592 MobiDBLite consensus disorder prediction 336 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2097 Lja-Chr6 49572017 49582449 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2097 K20044 - gmx:100783084 874.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2097 6 49572017 49582449 Lja6g2097 6 49572017 49582449 ECH
Lja4g1623 4 15196686 15201698 Lja6g2097 6 49572017 49582449 PCT