Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1623 ATGGGAACGTTTAAGAGCTTCAGAAATGTCTATGGAGCTCTCAAGGACTCCACCAAGGTTGGCTTAGCCAAGGTTAATAGCGACAACAAGGAATTGGATATTGCAGTTGTAAAAGCTACCAGCCATGCAGAATATCCTCCCAAAGAACGTCATGTTCGAAAAATCTTCTATGCCACATCAGCACACCAACCAAGGGCAGATATAGCTTACTGCATACACCTACTTTCCAAGAGACTTTCCAAGACACAAAATTGGATAGTTGCCATTAAAACATTGATAGTGATTCATAGGATATTGAGAGAAGGTGATCCTACCTTCAGAGAAGACCTTGTAAGCTACTCAAGGAGGATACATTTTCTCCAAATATCCAATTTCAATGATGACTCAAGCCTTCTGTCTTGGGAATGTTCTGAATGGATTCGAGCCTATGCACTATTTTTGGAAGAAAGACTTGAATGTTATAGAATCCTTAGATATGACATCGAATTTGAAACAAAACCATCAACTATTTCGACAAAGGTAAATAACAGAACACGAATGTTGGCTAGTGATGAATTGTTGGAGCAGCTTACTACACTTCAGAAACTTCTACATTGCCTTATTGACTGTCAGCCTGGAAGATTGGCTTTTAGAAATTATCTAATACAGTATGCTTTGGCCCTGGTATTAAAGGAGAGCTTCAAAATATATTGTGCTCTCAATGATGGAATCATAAATCTTGTGGATGCGTTCTTTGACATGTCAAGATATGATGCAGTAAAGGCTTTGCATATTTATAAAATAGCTATGCTACAGGCTGTTAATCTTGCACACTTTTATGAACGCTGCAAGGACTTAGACCTTGCTAGGAGTTTTCAATTTCCAACCTTGAGACAGCCACCTCATTCTTTTCTTATCACAATGGAAGAATACATTAAAGAAGTACCCACATCAGGCTCTATTAATGAGAAACAGGAAAATGATCAAACTTCTCAAAATGAAGAATCAGAGAGCGAAGAATCCAAAGAGACTCAAGCAGTTGAGAAACAAGCTGAAGAAGTCAATGAGAAAGAACTGGTAGATGAAGAAACACAACCTAAGGAAGAGGAGGTTGAACCTCCTTCTTTGATATCATTTGATGCTACTGACGATCTGTTGGGTCTAAATGAAATCAATCCAAAAGCTCAAGAACTGGAGGAAAGCAATGCATTGGCACTTGCAATTGTACCACCCGGCGGAAATAACTCCACCAATCTTGCTTTGACTAACATAAGTGGAACTTCTGCTTGGGAACTTGCATTGGTTACAACACCAAGTAACCACTCCAGCCCAGCACCAAACCGCAAAATGGCTGGTGGATTTGACAAGCTATTACTAGACAGTTTATATGAAGATGAAAATGCAAGGAGACAGCTTCAACTACAAAATGCAGGTTATGAATATGAGGGAATGACTCTGCATAACCCATTCAATCACTATACTCAACATGATCCATTTGCAATAGGACCTCCACACAATGTGCAAATGACATTGACGGCTCAACAACATCAACAACAACAACATCATCATCAAATGATGTTCCAACAGCAGCAACAACATAACATGATAATGGTCCCAGCTTACCAGTATCCGCATAATAGTCAATACTCTCAACGGAGTTCTTCTAATCCATTTGAAGATCCCTTACCAGTATCTAGCCATTCTTATAGTTCCACGCACCATCAAGTGAATTACAATTTTATCTAG 1725 0.3913 MGTFKSFRNVYGALKDSTKVGLAKVNSDNKELDIAVVKATSHAEYPPKERHVRKIFYATSAHQPRADIAYCIHLLSKRLSKTQNWIVAIKTLIVIHRILREGDPTFREDLVSYSRRIHFLQISNFNDDSSLLSWECSEWIRAYALFLEERLECYRILRYDIEFETKPSTISTKVNNRTRMLASDELLEQLTTLQKLLHCLIDCQPGRLAFRNYLIQYALALVLKESFKIYCALNDGIINLVDAFFDMSRYDAVKALHIYKIAMLQAVNLAHFYERCKDLDLARSFQFPTLRQPPHSFLITMEEYIKEVPTSGSINEKQENDQTSQNEESESEESKETQAVEKQAEEVNEKELVDEETQPKEEEVEPPSLISFDATDDLLGLNEINPKAQELEESNALALAIVPPGGNNSTNLALTNISGTSAWELALVTTPSNHSSPAPNRKMAGGFDKLLLDSLYEDENARRQLQLQNAGYEYEGMTLHNPFNHYTQHDPFAIGPPHNVQMTLTAQQHQQQQHHHQMMFQQQQQHNMIMVPAYQYPHNSQYSQRSSSNPFEDPLPVSSHSYSSTHHQVNYNFI* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1623 574 SUPERFAMILY ENTH/VHS domain 31 161 IPR008942 -
Lja4g1623 574 MobiDBLite consensus disorder prediction 539 563 - -
Lja4g1623 574 PANTHER CLATHRIN ASSEMBLY PLANT-LIKE PROTEIN 1 561 - -
Lja4g1623 574 MobiDBLite consensus disorder prediction 310 371 - -
Lja4g1623 574 Gene3D ANTH domain 171 323 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Lja4g1623 574 Gene3D - 6 162 IPR008942 -
Lja4g1623 574 Pfam ANTH domain 31 307 IPR011417 GO:0005543
Lja4g1623 574 PANTHER CLATHRIN ASSEMBLY PROTEIN 1 561 IPR045192 GO:0048268|GO:0072583
Lja4g1623 574 MobiDBLite consensus disorder prediction 321 367 - -
Lja4g1623 574 CDD ANTH_N 32 154 - -
Lja4g1623 574 ProSiteProfiles ENTH domain profile. 24 161 IPR013809 -
Lja4g1623 574 SUPERFAMILY GAT-like domain 175 307 - -
Lja4g1623 574 SMART enth_2 30 161 IPR013809 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1623 Lja-Chr4 15196686 15201698 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1623 K20044 - gmx:100818165 779.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1623 4 15196686 15201698 Lja4g1623 4 15196686 15201698 ECH
Lja4g1623 4 15196686 15201698 Lja6g2097 6 49572017 49582449 PCT