Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2094 ATGGCCACCGCCGAACCTACCCCGAACGGCACCCCCGCCACCGCCACCGCCTCGAATCCACTTCCATCTGACAATTCCTCCGACGTCCAACCACCCACCGCCGACGCTGCCGCAGCCACCGCCCCATCCACTCAAGAGCCCGAGACAGAAGCTGAAGACGCCCCTGACACCACCGCGGACACTACTCCACCGGAAAAGAAATGGCCAGGCTGGCCAGGGGACTGCGTTTACCGTCTTGTCGTCCCTGTGGGCAAGGTGGGCAGCATCATCGGCCGCAAGGGAGAGCTCATCAAGAAGATCTGCGAAGAGACTCGAGCTCGCGTTCGCGTCCTCGAGGCTTCCGTTGGCACGCCTGATCGAATCGTACTCATATCAGGGAAGGAAGAGCTAGATGCAGCTCTTTCGCCTGCAATGGATGCGGTTATAAGGGTATTCAAGCGCGTCTCTGGGCTATCGGAAGCTGATGGTGAGATTAAAGGGTCTGCTGCTGCTGCTACATTCTGTTCTATCCGTTTATTGACGGCGGCAACACAGGCTATCAATTTGATAGGAAAGCAAGGTTCAACAATTAGAGCCATACATGAGAATACCGGCGCTTCTATTAAAGTACTGTCAGGAGATGAGGTGCAATCTTTTGCTACTGCGGATGAGAGGATCATAGAATTGCAGGGAGAAGCCTTGAAGGTCCTTAATGCGCTGGAAGCTGTGGTTGGCCATCTGAGGAAATTTTTGGTTGACCACAGTGTTCTTCCCTTATTTGAGAAAACTTACAATACGCCCATCGCACAAGACCGTCAAGCAGAGACCTGGTCTAACAAGTCATCGCTGCACACTACTTCACACAATAGCATATTTTCTGATATGCCGCCTTCAGCAAAAAGGGATTCTGTCTTTGTGGACCGTGAAAGTCAATTGGACTCTTTACTTCCTTCCTCCACTATGTCTCTCTATGGCCAAGATGCTTCACATTCTAATATTCGTTCTTCAGCTCTTAGTCGTGTTGGTGCTCCCATTGTTACTACGGTAATACAAACAATGCAAATTCCACTATCCTATGCAGAGGATATCATTGGTATTCAAGGGAAAAATATTGATTACATTCGCCGCGCTAGTGGAGCCATATTGATTGTGCAGGAGAGCAGGGTGCCTGATGAAATCATTGTGGAAATAAAAGGCACCTCGTCTCAGGTTCAACTGGCACAAGAACTGATTCAGGATATTATAAACAGTCACAGAGAACCTGTTGCTAGCAGTTATGGCAGGTTAGATGCAGATCTGAGGTCTTCATATTCTCAGATGAGCACTGCGCCCCGCTTCTCATCTTCGATGTCCTCACAACCATACAACACAGGTTATGGAGCATCCGGTTTAGGGGACTACAGTACTTTCAGACTTTAA 1398 0.4957 MATAEPTPNGTPATATASNPLPSDNSSDVQPPTADAAAATAPSTQEPETEAEDAPDTTADTTPPEKKWPGWPGDCVYRLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLISGKEELDAALSPAMDAVIRVFKRVSGLSEADGEIKGSAAAATFCSIRLLTAATQAINLIGKQGSTIRAIHENTGASIKVLSGDEVQSFATADERIIELQGEALKVLNALEAVVGHLRKFLVDHSVLPLFEKTYNTPIAQDRQAETWSNKSSLHTTSHNSIFSDMPPSAKRDSVFVDRESQLDSLLPSSTMSLYGQDASHSNIRSSALSRVGAPIVTTVIQTMQIPLSYAEDIIGIQGKNIDYIRRASGAILIVQESRVPDEIIVEIKGTSSQVQLAQELIQDIINSHREPVASSYGRLDADLRSSYSQMSTAPRFSSSMSSQPYNTGYGASGLGDYSTFRL* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2094 465 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN PEPPER 63 453 - -
Lja6g2094 465 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 166 248 IPR036612 GO:0003723
Lja6g2094 465 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 68 129 IPR036612 GO:0003723
Lja6g2094 465 Gene3D K Homology domain, type 1 340 435 IPR036612 GO:0003723
Lja6g2094 465 MobiDBLite consensus disorder prediction 1 47 - -
Lja6g2094 465 CDD PCBP_like_KH 169 237 - -
Lja6g2094 465 Gene3D K Homology domain, type 1 168 243 IPR036612 GO:0003723
Lja6g2094 465 SMART kh_6 166 241 IPR004087 GO:0003676
Lja6g2094 465 SMART kh_6 73 146 IPR004087 GO:0003676
Lja6g2094 465 SMART kh_6 340 409 IPR004087 GO:0003676
Lja6g2094 465 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 63 453 - -
Lja6g2094 465 ProSiteProfiles Type-1 KH domain profile. 74 141 - -
Lja6g2094 465 CDD PCBP_like_KH 76 145 - -
Lja6g2094 465 Pfam KH domain 344 406 IPR004088 GO:0003723
Lja6g2094 465 Pfam KH domain 181 236 IPR004088 GO:0003723
Lja6g2094 465 Pfam KH domain 77 133 IPR004088 GO:0003723
Lja6g2094 465 ProSiteProfiles Type-1 KH domain profile. 341 404 - -
Lja6g2094 465 ProSiteProfiles Type-1 KH domain profile. 167 236 - -
Lja6g2094 465 CDD KH-I 343 405 - -
Lja6g2094 465 MobiDBLite consensus disorder prediction 1 71 - -
Lja6g2094 465 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 337 410 IPR036612 GO:0003723
Lja6g2094 465 Gene3D K Homology domain, type 1 74 146 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2094 Lja-Chr6 49528984 49536230 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2094 K21444 - gmx:100815466 645.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2094 6 49528984 49536230 Lja6g2094 6 49528984 49536230 ECH
Lja4g1616 4 15116951 15121186 Lja6g2094 6 49528984 49536230 PCT