Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1616 ATGGCCACACCGGACCCAATCCTCAACGGCACCACCTCACAACCACTCACCGAGCCACCCCCCGCCGCCGAACCTGAATCCGCCGACAAAAGATGGCCGGGCTGGCCCGGCCACTGCGTGTACCGGATAATCGTGCCGGTCCTCAAGGTCGGCAGCATCATCGGCCGCAAAGGCGAACTCATCAAGAAGACTTGCGAAGAGACTCGAGCTCGCATTCGCGTTCTCGATGCTCCCCTTGGTACTCCTGATCGAATCGTACTTGTATCAGGGAAAGAAGAGCCAGAGGCACCTCTTTCTCCTGCAATGGACGCGGTGATAAGGATATTTAAACGCGTCTCGGGATTGGCTGAAATTGAAGCAGCTCCTGGGGCTACATTTTGTTCCGTCCGTTTATTGGTGGCGTCGACTCAGGCTATCAATTTGATTGGAAAGCAGGGCTCTTTGATTAAATCCATACAGGAGAGTACCGGTGCTGCTGTTAGAGTATTGACTGGAGATGAGCTTCCATCCTATGCTGCTGCTGATGAGAGGATTGTGGAAGTGCAGGGGGAACCCTTGAAGGTCCTTAAAGCTCTGGAAGCAGTAGTTGGACACTTGAGGAAGTTTTTGGTTGATCATACTGTTCTTCCCCTATTTGAGAAACCTGGCAATGCTACAATCTCCCAAGACCGCCAGACAGATGCCTGGGCTGACAAACCATCACTGCATAGTGCTTCACAAACTAGCATTGTTGCTGATATTCCTCTTTCAAATAAAAGGGATTCTTTCTATGCTGACCGTGAAAGTCAATTGGAGTCATTTATCTCTTCCTCGTCAATGTCATTATATGGGCAAGACTCATCACTTTCTGGTCTGCGTTCTTCAGCTCTTAGTCGTGCCACCCCTCCTATTGTTACAACGGTAATACAAACAATGCAAATACCACTGTCCTATGCAGAGGACATAATTGGTATGCAAGGGTCAAATATTGATTACATTCGCCGTACTAGTGGAGCCATATTGACTGTGCAAGAGAGCCGGGTGCCTGATGAAATCATTGTGGAAATAAAAGGCACCTCATCACAGGTTCAAATAGCACAACAATTGATTCAGGATGTTATAACCCATCACCAGGAACCTGTCGCTAGTAGTTACAGCAGGTTAGATGCAGGTCTGAGATCTTCTTACTCTCAATTGGGAAGTTCATCGTATCCGTCGTCTTCATTGCCCTCGCAACCCTACAATGGGTATGGATCTTCTGGTCTAGGAGGAGGCTATAGTAGTACTTTCAGACTATAA 1278 0.4828 MATPDPILNGTTSQPLTEPPPAAEPESADKRWPGWPGHCVYRIIVPVLKVGSIIGRKGELIKKTCEETRARIRVLDAPLGTPDRIVLVSGKEEPEAPLSPAMDAVIRIFKRVSGLAEIEAAPGATFCSVRLLVASTQAINLIGKQGSLIKSIQESTGAAVRVLTGDELPSYAAADERIVEVQGEPLKVLKALEAVVGHLRKFLVDHTVLPLFEKPGNATISQDRQTDAWADKPSLHSASQTSIVADIPLSNKRDSFYADRESQLESFISSSSMSLYGQDSSLSGLRSSALSRATPPIVTTVIQTMQIPLSYAEDIIGMQGSNIDYIRRTSGAILTVQESRVPDEIIVEIKGTSSQVQIAQQLIQDVITHHQEPVASSYSRLDAGLRSSYSQLGSSSYPSSSLPSQPYNGYGSSGLGGGYSSTFRL* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1616 425 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 25 418 - -
Lja4g1616 425 Gene3D K Homology domain, type 1 287 371 IPR036612 GO:0003723
Lja4g1616 425 CDD PCBP_like_KH 40 109 - -
Lja4g1616 425 Gene3D - 38 203 - -
Lja4g1616 425 ProSiteProfiles Type-1 KH domain profile. 126 195 - -
Lja4g1616 425 PANTHER PROTEIN, PUTATIVE-RELATED 25 418 - -
Lja4g1616 425 CDD KH-I 302 364 - -
Lja4g1616 425 ProSiteProfiles Type-1 KH domain profile. 38 105 - -
Lja4g1616 425 ProSiteProfiles Type-1 KH domain profile. 300 363 - -
Lja4g1616 425 MobiDBLite consensus disorder prediction 1 31 - -
Lja4g1616 425 SMART kh_6 37 110 IPR004087 GO:0003676
Lja4g1616 425 SMART kh_6 125 200 IPR004087 GO:0003676
Lja4g1616 425 SMART kh_6 299 368 IPR004087 GO:0003676
Lja4g1616 425 Pfam KH domain 303 365 IPR004088 GO:0003723
Lja4g1616 425 Pfam KH domain 41 93 IPR004088 GO:0003723
Lja4g1616 425 Pfam KH domain 129 195 IPR004088 GO:0003723
Lja4g1616 425 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 125 208 IPR036612 GO:0003723
Lja4g1616 425 MobiDBLite consensus disorder prediction 1 17 - -
Lja4g1616 425 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 295 369 IPR036612 GO:0003723
Lja4g1616 425 CDD PCBP_like_KH 128 196 - -
Lja4g1616 425 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 31 93 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1616 Lja-Chr4 15116951 15121186 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1616 K21444 - gmx:100802089 579.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1616 4 15116951 15121186 Lja4g1616 4 15116951 15121186 ECH
Lja4g1616 4 15116951 15121186 Lja6g2094 6 49528984 49536230 PCT